CircRNA Information

General Information
circRNA Basic Information
CircID chr12:89349080|89349305
Strand +
CircType exon
Host Gene ENSG00000139318.7;
Algorism CIRI2;
Sequence CACCCCTTCCAACCAGAATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGGAATTGGTTAATACTAACAGAGAGATTTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:89349080|89349305 hsa-miR-181c-5p 0 0 1
chr12:89349080|89349305 hsa-miR-181c-3p 0 0 1
chr12:89349080|89349305 hsa-miR-325 0 0 1
chr12:89349080|89349305 hsa-miR-181d-5p 0 0 1
chr12:89349080|89349305 hsa-miR-181d-3p 0 0 1
chr12:89349080|89349305 hsa-miR-616-5p 0 0 1
chr12:89349080|89349305 hsa-miR-616-3p 0 0 1
chr12:89349080|89349305 hsa-miR-216b-5p 0 0 1
chr12:89349080|89349305 hsa-miR-216b-3p 0 0 1
chr12:89349080|89349305 hsa-miR-1277-5p 0 0 1
chr12:89349080|89349305 hsa-miR-1277-3p 0 0 1
chr12:89349080|89349305 hsa-miR-1324 0 0 1
chr12:89349080|89349305 hsa-miR-491-5p 0 0 1
chr12:89349080|89349305 hsa-miR-615-5p 0 0 1
chr12:89349080|89349305 hsa-miR-193a-5p 0 1 1
chr12:89349080|89349305 hsa-miR-628-3p 0 0 1
chr12:89349080|89349305 hsa-miR-1207-3p 0 1 1
chr12:89349080|89349305 hsa-miR-338-3p 0 0 1
chr12:89349080|89349305 hsa-miR-138 0 0 1
chr12:89349080|89349305 hsa-miR-181a 0 0 1
chr12:89349080|89349305 hsa-miR-181b 0 0 1
chr12:89349080|89349305 hsa-miR-514 0 0 1
chr12:89349080|89349305 hsa-miR-1231 0 1 0
chr12:89349080|89349305 hsa-miR-4322 1 0 0
chr12:89349080|89349305 hsa-miR-4270 1 0 0
chr12:89349080|89349305 hsa-miR-4455 0 1 0
chr12:89349080|89349305 hsa-miR-4654 1 0 0
chr12:89349080|89349305 hsa-miR-4739 1 0 0
chr12:89349080|89349305 hsa-miR-5194 0 1 0
chr12:89349080|89349305 hsa-miR-5685 0 1 0
chr12:89349080|89349305 hsa-miR-12118 0 1 0
chr12:89349080|89349305 hsa-miR-138-5p 0 1 0
chr12:89349080|89349305 hsa-miR-93-3p 0 1 0
chr12:89349080|89349305 hsa-miR-128-1-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6747-5p 1 1 0
chr12:89349080|89349305 hsa-miR-7106-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6825-5p 1 0 0
chr12:89349080|89349305 hsa-miR-7851-3p 1 0 0
chr12:89349080|89349305 hsa-miR-6759-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6742-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6796-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6782-5p 1 1 0
chr12:89349080|89349305 hsa-miR-6765-3p 0 1 0
chr12:89349080|89349305 hsa-miR-4738-3p 0 1 0
chr12:89349080|89349305 hsa-miR-4640-5p 1 0 0
chr12:89349080|89349305 hsa-miR-149-3p 1 0 0
chr12:89349080|89349305 hsa-miR-6864-5p 0 1 0
chr12:89349080|89349305 hsa-miR-6895-5p 1 1 0
chr12:89349080|89349305 hsa-miR-4774-5p 0 1 0
chr12:89349080|89349305 hsa-miR-1207-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6737-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6752-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6754-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6756-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6803-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6819-5p 1 0 0
chr12:89349080|89349305 hsa-miR-7107-5p 1 0 0
chr12:89349080|89349305 hsa-miR-7110-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6779-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6797-5p 1 0 0
chr12:89349080|89349305 hsa-miR-642b-3p 0 1 0
chr12:89349080|89349305 hsa-miR-4726-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6883-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6845-5p 0 1 0
chr12:89349080|89349305 hsa-miR-1914-3p 1 0 0
chr12:89349080|89349305 hsa-miR-6891-5p 1 1 0
chr12:89349080|89349305 hsa-miR-6762-5p 1 0 0
chr12:89349080|89349305 hsa-miR-6817-5p 1 0 0
chr12:89349080|89349305 hsa-miR-642a-3p 0 1 0
chr12:89349080|89349305 hsa-miR-4690-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:89349080|89349305
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MCLALQQFLLAASAGLLSLCVAPGVKMTPAVCTRQGYQVRNWLILTERF
Nucleotide Sequence ATGTGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAGACAAGGTTACCAAGTGCGGAATTGGTTAATACTAACAGAGAGATTT
CircID chr12:89349080|89349305
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MLECVWPFSSFSWQHQLGCFLCVWPQVSK
Nucleotide Sequence TTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGA
CircID chr12:89349080|89349305
ORF Type ORF3
Protein Length 53
Nucleotide Length 162
Protein Sequence MYTRWTLCNLRERPHTPPCWNVSGPSAVSLGSISWAAFFVCGPRCQNDTSCLY
Nucleotide Sequence ATGTATACCAGGTGGACTCTCTGCAATCTACGTGAAAGACCCCACACCCCTCCTTGCTGGAATGTGTCTGGCCCTTCAGCAGTTTCTCTTGGCAGCATCAGCTGGGCTGCTTTCTTTGTGTGTGGCCCCAGGTGTCAAAATGACACCAGCTGTCTGTACTAG
CircID chr12:89349080|89349305
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MGPHTKKAAQLMLPRETAEGPDTFQQGGVWGLSRRLQRVHLVYILVGRG
Nucleotide Sequence CTGGGGCCACACACAAAGAAAGCAGCCCAGCTGATGCTGCCAAGAGAAACTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTCTTTCACGTAGATTGCAGAGAGTCCACCTGGTATACATTCTGGTTGGAAGGGGT
CircID chr12:89349080|89349305
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MVTLSSTDSWCHFDTWGHTQRKQPS
Nucleotide Sequence TTGGTAACCTTGTCTAGTACAGACAGCTGGTGTCATTTTGACACCTGGGGCCACACACAAAGAAAGCAGCCCAGCTGA
CircID chr12:89349080|89349305
ORF Type ORF6
Protein Length 33
Nucleotide Length 99
Protein Sequence MLKGQTHSSKEGCGVFHVDCRESTWYTFWLEGV
Nucleotide Sequence CTGCTGAAGGGCCAGACACATTCCAGCAAGGAGGGGTGTGGGGTCTTTCACGTAGATTGCAGAGAGTCCACCTGGTATACATTCTGGTTGGAAGGGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab