CircRNA Information

General Information
circRNA Basic Information
CircID chr12:94209590|94220163
Strand +
CircType exon
Host Gene ENSG00000136040.8;
Algorism find_circ;CIRI2;DCC;
Sequence GTGCACTTTTCAAGGAGATTGTGTACATTCAGAGAACTTAGAAAACTGGCTGGATATTTCGTCTGGAGCAAAAAAGTGCCCTAAAATTCAGATAATTCGAAGCAGTAAAGAAAAGACTACAGTGACTATGGTGGGAAGCTTCTCTCCAAGACACTCAAAGTGCATGGTGAAGAATGTGGACTCTAGCAGGGAGCTCTGCCAGAATAAAAGTCAGCCCAACCGGACCTGCACCTGTAGCATCCCAACCAGAGCAACCTACAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:94209590|94220163 hsa-miR-17-5p 0 0 1
chr12:94209590|94220163 hsa-miR-17-3p 0 0 1
chr12:94209590|94220163 hsa-miR-20a-5p 0 0 1
chr12:94209590|94220163 hsa-miR-20a-3p 0 0 1
chr12:94209590|94220163 hsa-miR-93-5p 0 0 1
chr12:94209590|94220163 hsa-miR-93-3p 0 0 1
chr12:94209590|94220163 hsa-miR-106a-5p 0 0 1
chr12:94209590|94220163 hsa-miR-106a-3p 0 0 1
chr12:94209590|94220163 hsa-miR-181c-5p 0 0 1
chr12:94209590|94220163 hsa-miR-181c-3p 0 0 1
chr12:94209590|94220163 hsa-miR-146a-5p 0 0 1
chr12:94209590|94220163 hsa-miR-146a-3p 0 0 1
chr12:94209590|94220163 hsa-miR-186-5p 0 0 1
chr12:94209590|94220163 hsa-miR-186-3p 0 0 1
chr12:94209590|94220163 hsa-miR-106b-5p 0 0 1
chr12:94209590|94220163 hsa-miR-106b-3p 0 0 1
chr12:94209590|94220163 hsa-miR-20b-5p 0 0 1
chr12:94209590|94220163 hsa-miR-20b-3p 0 0 1
chr12:94209590|94220163 hsa-miR-492 0 0 1
chr12:94209590|94220163 hsa-miR-181d-5p 0 0 1
chr12:94209590|94220163 hsa-miR-181d-3p 0 0 1
chr12:94209590|94220163 hsa-miR-498-5p 0 0 1
chr12:94209590|94220163 hsa-miR-498-3p 0 0 1
chr12:94209590|94220163 hsa-miR-519d-5p 0 0 1
chr12:94209590|94220163 hsa-miR-519d-3p 0 0 1
chr12:94209590|94220163 hsa-miR-520g-5p 0 0 1
chr12:94209590|94220163 hsa-miR-520g-3p 0 0 1
chr12:94209590|94220163 hsa-miR-520h 0 0 1
chr12:94209590|94220163 hsa-miR-888-5p 0 0 1
chr12:94209590|94220163 hsa-miR-888-3p 0 0 1
chr12:94209590|94220163 hsa-miR-892b 0 0 1
chr12:94209590|94220163 hsa-miR-541-5p 0 0 1
chr12:94209590|94220163 hsa-miR-541-3p 0 0 1
chr12:94209590|94220163 hsa-miR-920 0 1 1
chr12:94209590|94220163 hsa-miR-942-5p 0 0 1
chr12:94209590|94220163 hsa-miR-942-3p 0 0 1
chr12:94209590|94220163 hsa-miR-548e-5p 0 0 1
chr12:94209590|94220163 hsa-miR-548e-3p 0 0 1
chr12:94209590|94220163 hsa-miR-1287-5p 0 0 1
chr12:94209590|94220163 hsa-miR-1287-3p 0 0 1
chr12:94209590|94220163 hsa-miR-1305 0 0 1
chr12:94209590|94220163 hsa-miR-1251-5p 0 0 1
chr12:94209590|94220163 hsa-miR-1251-3p 0 0 1
chr12:94209590|94220163 hsa-miR-548n 0 0 1
chr12:94209590|94220163 hsa-miR-548p 0 0 1
chr12:94209590|94220163 hsa-miR-92a-1-5p 0 1 1
chr12:94209590|94220163 hsa-miR-139-5p 0 0 1
chr12:94209590|94220163 hsa-miR-1283 0 0 1
chr12:94209590|94220163 hsa-miR-324-5p 0 1 1
chr12:94209590|94220163 hsa-miR-654-5p 0 0 1
chr12:94209590|94220163 hsa-miR-524-5p 0 0 1
chr12:94209590|94220163 hsa-miR-146b-5p 0 0 1
chr12:94209590|94220163 hsa-miR-519b-3p 0 0 1
chr12:94209590|94220163 hsa-miR-519c-3p 0 0 1
chr12:94209590|94220163 hsa-miR-515-5p 0 0 1
chr12:94209590|94220163 hsa-miR-548a-3p 0 0 1
chr12:94209590|94220163 hsa-miR-520d-5p 0 0 1
chr12:94209590|94220163 hsa-miR-181a 0 0 1
chr12:94209590|94220163 hsa-miR-181b 0 0 1
chr12:94209590|94220163 hsa-miR-548f 0 0 1
chr12:94209590|94220163 hsa-miR-516b 0 0 1
chr12:94209590|94220163 hsa-miR-519a 0 0 1
chr12:94209590|94220163 hsa-miR-936 1 0 0
chr12:94209590|94220163 hsa-miR-4428 0 1 0
chr12:94209590|94220163 hsa-miR-4430 1 0 0
chr12:94209590|94220163 hsa-miR-4471 0 1 0
chr12:94209590|94220163 hsa-miR-4505 1 0 0
chr12:94209590|94220163 hsa-miR-4518 1 0 0
chr12:94209590|94220163 hsa-miR-5190 0 1 0
chr12:94209590|94220163 hsa-miR-5684 0 1 0
chr12:94209590|94220163 hsa-miR-5787 1 0 0
chr12:94209590|94220163 hsa-miR-6127 1 0 0
chr12:94209590|94220163 hsa-miR-12128 1 0 0
chr12:94209590|94220163 hsa-miR-105-3p 1 0 0
chr12:94209590|94220163 hsa-miR-27b-5p 1 0 0
chr12:94209590|94220163 hsa-miR-6715b-3p 1 0 0
chr12:94209590|94220163 hsa-miR-4738-3p 1 0 0
chr12:94209590|94220163 hsa-miR-4732-5p 1 0 0
chr12:94209590|94220163 hsa-miR-3925-5p 1 1 0
chr12:94209590|94220163 hsa-miR-1307-5p 0 1 0
chr12:94209590|94220163 hsa-miR-516b-5p 0 1 0
chr12:94209590|94220163 hsa-miR-5003-3p 0 1 0
chr12:94209590|94220163 hsa-miR-6804-3p 0 1 0
chr12:94209590|94220163 hsa-miR-6501-3p 0 1 0
chr12:94209590|94220163 hsa-miR-4709-5p 1 0 0
chr12:94209590|94220163 hsa-miR-500a-3p 0 1 0
chr12:94209590|94220163 hsa-miR-1343-5p 1 0 0
chr12:94209590|94220163 hsa-miR-5001-5p 1 0 0
chr12:94209590|94220163 hsa-miR-6754-5p 1 0 0
chr12:94209590|94220163 hsa-miR-3620-5p 1 0 0
chr12:94209590|94220163 hsa-miR-6750-5p 1 0 0
chr12:94209590|94220163 hsa-miR-6790-5p 1 0 0
chr12:94209590|94220163 hsa-miR-5591-5p 0 1 0
chr12:94209590|94220163 hsa-miR-4690-3p 1 1 0
chr12:94209590|94220163 hsa-miR-519a-3p 0 1 0
chr12:94209590|94220163 hsa-miR-7161-5p 0 1 0
chr12:94209590|94220163 hsa-miR-3145-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:94209590|94220163
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLESTFFTMHFECLGEKLPTIVTVVFSLLLRII
Nucleotide Sequence CTGCTAGAGTCCACATTCTTCACCATGCACTTTGAGTGTCTTGGAGAGAAGCTTCCCACCATAGTCACTGTAGTCTTTTCTTTACTGCTTCGAATTATCTGA
CircID chr12:94209590|94220163
ORF Type ORF2
Protein Length 71
Nucleotide Length 213
Protein Sequence MDISSGAKKCPKIQIIRSSKEKTTVTMVGSFSPRHSKCMVKNVDSSRELCQNKSQPNRTCTCSIPTRATYK
Nucleotide Sequence CTGGATATTTCGTCTGGAGCAAAAAAGTGCCCTAAAATTCAGATAATTCGAAGCAGTAAAGAAAAGACTACAGTGACTATGGTGGGAAGCTTCTCTCCAAGACACTCAAAGTGCATGGTGAAGAATGTGGACTCTAGCAGGGAGCTCTGCCAGAATAAAAGTCAGCCCAACCGGACCTGCACCTGTAGCATCCCAACCAGAGCAACCTACAAA
CircID chr12:94209590|94220163
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MWTLAGSSARIKVSPTGPAPVASQPEQPTK
Nucleotide Sequence ATGTGGACTCTAGCAGGGAGCTCTGCCAGAATAAAAGTCAGCCCAACCGGACCTGCACCTGTAGCATCCCAACCAGAGCAACCTACAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:94209590|94220163 HNRNPA1 2 0 0
chr12:94209590|94220163 ELAVL1 0 1 0
chr12:94209590|94220163 U2AF1 0 0 1
chr12:94209590|94220163 MSI2 0 0 1
chr12:94209590|94220163 U2AF2 3 1 0
chr12:94209590|94220163 LIN28B 1 0 0
chr12:94209590|94220163 TIA1 1 0 0
chr12:94209590|94220163 HNRNPM 1 0 0
chr12:94209590|94220163 TAF15 1 0 0
chr12:94209590|94220163 IGF2BP3 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab