CircRNA Information

General Information
circRNA Basic Information
CircID chr12:96018848|96019240
Strand -
CircType exon
Host Gene ENSG00000111144.8;
Algorism CIRI2;
Sequence TGTCCCCATACATACGGTCCTCCCAGATCTTCTGCTATTTTAAGCATAGATTCAGTCTGAAAAATCAACATATATATGTCTGTATGCCTTAATTATCACCATTGTACATTTCTTAAAATTGTATATTGCTTTCTATGAAGGTTACAAGTTAATGATTTTTATGTTAAATGAAAATGATAAAAAGAATGTAGCAACTACACATCTACATAAAAGACAATCTGGTTCTTTCCCCGTATCACTTAAAACCATCACATTTCACACTCAAAATCTTCAATCTACTGTCTATCACAATGATTACAAAGGATAACTAAATGACCAACCTCAGAAAACTCATAAGCAGACTTTTCCACCTGCTCTTTCTCAGACCACACCAAAGTTCTTGGGCCAATTTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:96018848|96019240 hsa-miR-181c-5p 0 0 1
chr12:96018848|96019240 hsa-miR-181c-3p 0 0 1
chr12:96018848|96019240 hsa-miR-205-5p 0 0 1
chr12:96018848|96019240 hsa-miR-205-3p 0 0 1
chr12:96018848|96019240 hsa-miR-221-5p 0 0 1
chr12:96018848|96019240 hsa-miR-221-3p 0 0 1
chr12:96018848|96019240 hsa-miR-222-5p 0 0 1
chr12:96018848|96019240 hsa-miR-222-3p 0 0 1
chr12:96018848|96019240 hsa-miR-381-5p 0 0 1
chr12:96018848|96019240 hsa-miR-381-3p 0 0 1
chr12:96018848|96019240 hsa-miR-328-5p 0 0 1
chr12:96018848|96019240 hsa-miR-328-3p 0 0 1
chr12:96018848|96019240 hsa-miR-376b-5p 0 0 1
chr12:96018848|96019240 hsa-miR-376b-3p 0 0 1
chr12:96018848|96019240 hsa-miR-511-5p 0 0 1
chr12:96018848|96019240 hsa-miR-511-3p 0 0 1
chr12:96018848|96019240 hsa-miR-181d-5p 0 0 1
chr12:96018848|96019240 hsa-miR-181d-3p 0 0 1
chr12:96018848|96019240 hsa-miR-506-5p 0 0 1
chr12:96018848|96019240 hsa-miR-506-3p 0 0 1
chr12:96018848|96019240 hsa-miR-539-5p 0 0 1
chr12:96018848|96019240 hsa-miR-539-3p 0 0 1
chr12:96018848|96019240 hsa-miR-579-5p 0 0 1
chr12:96018848|96019240 hsa-miR-579-3p 0 0 1
chr12:96018848|96019240 hsa-miR-298 1 1 1
chr12:96018848|96019240 hsa-miR-300 0 0 1
chr12:96018848|96019240 hsa-miR-936 0 1 1
chr12:96018848|96019240 hsa-miR-1276 0 0 1
chr12:96018848|96019240 hsa-miR-574-5p 1 1 1
chr12:96018848|96019240 hsa-miR-501-5p 0 0 1
chr12:96018848|96019240 hsa-miR-576-3p 0 0 1
chr12:96018848|96019240 hsa-miR-362-5p 0 0 1
chr12:96018848|96019240 hsa-miR-548b-3p 0 0 1
chr12:96018848|96019240 hsa-miR-590-3p 0 0 1
chr12:96018848|96019240 hsa-miR-548c-3p 0 0 1
chr12:96018848|96019240 hsa-miR-9 0 0 1
chr12:96018848|96019240 hsa-miR-181a 0 0 1
chr12:96018848|96019240 hsa-miR-181b 0 0 1
chr12:96018848|96019240 hsa-miR-124 0 0 1
chr12:96018848|96019240 hsa-miR-376a 0 0 1
chr12:96018848|96019240 hsa-miR-203 0 0 1
chr12:96018848|96019240 hsa-miR-219-5p 0 0 1
chr12:96018848|96019240 hsa-miR-622 1 0 0
chr12:96018848|96019240 hsa-miR-1294 1 1 0
chr12:96018848|96019240 hsa-miR-1827 1 0 0
chr12:96018848|96019240 hsa-miR-544b 0 1 0
chr12:96018848|96019240 hsa-miR-3175 1 1 0
chr12:96018848|96019240 hsa-miR-3188 1 0 0
chr12:96018848|96019240 hsa-miR-3621 1 0 0
chr12:96018848|96019240 hsa-miR-3650 1 0 0
chr12:96018848|96019240 hsa-miR-3689c 0 1 0
chr12:96018848|96019240 hsa-miR-4656 1 0 0
chr12:96018848|96019240 hsa-miR-4658 1 1 0
chr12:96018848|96019240 hsa-miR-4706 1 0 0
chr12:96018848|96019240 hsa-miR-6086 1 0 0
chr12:96018848|96019240 hsa-miR-6165 1 0 0
chr12:96018848|96019240 hsa-miR-6745 1 0 0
chr12:96018848|96019240 hsa-miR-12119 1 1 0
chr12:96018848|96019240 hsa-miR-122-5p 1 1 0
chr12:96018848|96019240 hsa-miR-6840-3p 1 0 0
chr12:96018848|96019240 hsa-miR-6747-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6765-5p 1 0 0
chr12:96018848|96019240 hsa-miR-7106-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6825-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6728-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6833-5p 1 0 0
chr12:96018848|96019240 hsa-miR-3192-5p 1 1 0
chr12:96018848|96019240 hsa-miR-7154-3p 1 0 0
chr12:96018848|96019240 hsa-miR-8069 1 1 0
chr12:96018848|96019240 hsa-miR-6881-5p 1 0 0
chr12:96018848|96019240 hsa-miR-3156-5p 0 1 0
chr12:96018848|96019240 hsa-miR-30b-3p 0 1 0
chr12:96018848|96019240 hsa-miR-1226-5p 1 0 0
chr12:96018848|96019240 hsa-miR-4640-5p 1 0 0
chr12:96018848|96019240 hsa-miR-149-3p 1 0 0
chr12:96018848|96019240 hsa-miR-625-5p 1 0 0
chr12:96018848|96019240 hsa-miR-3689b-3p 0 1 0
chr12:96018848|96019240 hsa-miR-6778-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6754-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6803-5p 1 0 0
chr12:96018848|96019240 hsa-miR-10401-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6779-5p 1 1 0
chr12:96018848|96019240 hsa-miR-4632-5p 1 0 0
chr12:96018848|96019240 hsa-miR-4725-3p 1 1 0
chr12:96018848|96019240 hsa-miR-4749-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6777-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6794-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6883-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6887-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6889-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6739-5p 0 1 0
chr12:96018848|96019240 hsa-miR-6773-5p 1 0 0
chr12:96018848|96019240 hsa-miR-4646-5p 1 0 0
chr12:96018848|96019240 hsa-miR-4747-5p 1 0 0
chr12:96018848|96019240 hsa-miR-4716-3p 1 0 0
chr12:96018848|96019240 hsa-miR-6785-5p 1 0 0
chr12:96018848|96019240 hsa-miR-6790-5p 1 1 0
chr12:96018848|96019240 hsa-miR-6849-5p 1 0 0
chr12:96018848|96019240 hsa-miR-7155-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:96018848|96019240
ORF Type ORF1
Protein Length 75
Nucleotide Length 228
Protein Sequence MYALIITIVHFLKLYIAFYEGYKLMIFMLNENDKKNVATTHLHKRQSGSFPVSLKTITFHTQNLQSTVYHNDYKG
Nucleotide Sequence CTGTATGCCTTAATTATCACCATTGTACATTTCTTAAAATTGTATATTGCTTTCTATGAAGGTTACAAGTTAATGATTTTTATGTTAAATGAAAATGATAAAAAGAATGTAGCAACTACACATCTACATAAAAGACAATCTGGTTCTTTCCCCGTATCACTTAAAACCATCACATTTCACACTCAAAATCTTCAATCTACTGTCTATCACAATGATTACAAAGGATAA
CircID chr12:96018848|96019240
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MVLSPYHLKPSHFTLKIFNLLSITMITKDN
Nucleotide Sequence CTGGTTCTTTCCCCGTATCACTTAAAACCATCACATTTCACACTCAAAATCTTCAATCTACTGTCTATCACAATGATTACAAAGGATAACTAA
CircID chr12:96018848|96019240
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MTNLRKLISRLFHLLFLRPHQSSWANL
Nucleotide Sequence ATGACCAACCTCAGAAAACTCATAAGCAGACTTTTCCACCTGCTCTTTCTCAGACCACACCAAAGTTCTTGGGCCAATTTG
CircID chr12:96018848|96019240
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MVLSDTGKEPDCLLCRCVVATFFLSFSFNIKIINL
Nucleotide Sequence ATGGTTTTAAGTGATACGGGGAAAGAACCAGATTGTCTTTTATGTAGATGTGTAGTTGCTACATTCTTTTTATCATTTTCATTTAACATAAAAATCATTAACTTGTAA
CircID chr12:96018848|96019240
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MVWSEKEQVEKSAYEFSEVGHLVILCNHCDRQ
Nucleotide Sequence TTGGTGTGGTCTGAGAAAGAGCAGGTGGAAAAGTCTGCTTATGAGTTTTCTGAGGTTGGTCATTTAGTTATCCTTTGTAATCATTGTGATAGACAGTAG
CircID chr12:96018848|96019240
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MAQELWCGLRKSRWKSLLMSFLRLVI
Nucleotide Sequence TTGGCCCAAGAACTTTGGTGTGGTCTGAGAAAGAGCAGGTGGAAAAGTCTGCTTATGAGTTTTCTGAGGTTGGTCATTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab