CircRNA Information

General Information
circRNA Basic Information
CircID chr12:977413|977573
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTACCATGCTTGCCTGGCCATGTCCCCTGAGGAAGGTCAAACTCCACCATTTCAAGTTCTTACCAAGAAGTTGTTGCCCACAAGCCCAAGATGTCTCCTGTTTATTAGGAAAATTTCCCCTCCCCTTTGACCAGCTGCCTGACATTTGCCTGGCAGTCAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:977413|977573 hsa-miR-192-5p 0 0 1
chr12:977413|977573 hsa-miR-192-3p 0 0 1
chr12:977413|977573 hsa-miR-215-5p 0 0 1
chr12:977413|977573 hsa-miR-215-3p 0 0 1
chr12:977413|977573 hsa-miR-134-5p 0 0 1
chr12:977413|977573 hsa-miR-134-3p 0 0 1
chr12:977413|977573 hsa-miR-384 0 0 1
chr12:977413|977573 hsa-miR-522-5p 0 0 1
chr12:977413|977573 hsa-miR-522-3p 0 0 1
chr12:977413|977573 hsa-miR-635 0 0 1
chr12:977413|977573 hsa-miR-1266-5p 0 0 1
chr12:977413|977573 hsa-miR-1266-3p 0 0 1
chr12:977413|977573 hsa-miR-1207-3p 0 0 1
chr12:977413|977573 hsa-miR-548b-3p 0 0 1
chr12:977413|977573 hsa-miR-203 0 0 1
chr12:977413|977573 hsa-miR-637 1 0 0
chr12:977413|977573 hsa-miR-3147 1 0 0
chr12:977413|977573 hsa-miR-4322 1 0 0
chr12:977413|977573 hsa-miR-4265 1 1 0
chr12:977413|977573 hsa-miR-3612 1 1 0
chr12:977413|977573 hsa-miR-3937 1 1 0
chr12:977413|977573 hsa-miR-4428 1 0 0
chr12:977413|977573 hsa-miR-4467 1 0 0
chr12:977413|977573 hsa-miR-4505 1 0 0
chr12:977413|977573 hsa-miR-4651 1 0 0
chr12:977413|977573 hsa-miR-4660 1 0 0
chr12:977413|977573 hsa-miR-4673 0 1 0
chr12:977413|977573 hsa-miR-4692 0 1 0
chr12:977413|977573 hsa-miR-6131 1 1 0
chr12:977413|977573 hsa-miR-8089 1 0 0
chr12:977413|977573 hsa-miR-12119 1 0 0
chr12:977413|977573 hsa-miR-6734-5p 1 0 0
chr12:977413|977573 hsa-miR-4433a-3p 1 0 0
chr12:977413|977573 hsa-miR-6765-5p 1 0 0
chr12:977413|977573 hsa-miR-7106-5p 1 0 0
chr12:977413|977573 hsa-miR-4687-3p 1 0 0
chr12:977413|977573 hsa-miR-3692-5p 1 0 0
chr12:977413|977573 hsa-miR-4695-5p 1 0 0
chr12:977413|977573 hsa-miR-769-5p 1 0 0
chr12:977413|977573 hsa-miR-4722-5p 1 0 0
chr12:977413|977573 hsa-miR-4755-3p 0 1 0
chr12:977413|977573 hsa-miR-1301-3p 1 0 0
chr12:977413|977573 hsa-miR-6783-5p 0 1 0
chr12:977413|977573 hsa-miR-6829-5p 1 0 0
chr12:977413|977573 hsa-miR-6827-5p 1 0 0
chr12:977413|977573 hsa-miR-6798-5p 1 0 0
chr12:977413|977573 hsa-miR-3126-5p 1 0 0
chr12:977413|977573 hsa-miR-6782-5p 1 0 0
chr12:977413|977573 hsa-miR-6810-5p 1 0 0
chr12:977413|977573 hsa-miR-6786-5p 1 0 0
chr12:977413|977573 hsa-miR-885-3p 1 0 0
chr12:977413|977573 hsa-miR-4690-5p 1 0 0
chr12:977413|977573 hsa-miR-6847-5p 1 0 0
chr12:977413|977573 hsa-miR-149-3p 1 0 0
chr12:977413|977573 hsa-miR-6824-5p 1 0 0
chr12:977413|977573 hsa-miR-6800-5p 1 0 0
chr12:977413|977573 hsa-miR-6895-5p 1 0 0
chr12:977413|977573 hsa-miR-7152-3p 1 0 0
chr12:977413|977573 hsa-miR-3191-3p 1 1 0
chr12:977413|977573 hsa-miR-4773 1 0 0
chr12:977413|977573 hsa-miR-6801-5p 1 1 0
chr12:977413|977573 hsa-miR-6792-5p 1 0 0
chr12:977413|977573 hsa-miR-4763-3p 1 0 0
chr12:977413|977573 hsa-miR-6778-5p 1 0 0
chr12:977413|977573 hsa-miR-6893-5p 1 0 0
chr12:977413|977573 hsa-miR-6775-5p 1 0 0
chr12:977413|977573 hsa-miR-6726-5p 1 0 0
chr12:977413|977573 hsa-miR-6756-5p 1 0 0
chr12:977413|977573 hsa-miR-1249-5p 1 0 0
chr12:977413|977573 hsa-miR-6774-5p 0 1 0
chr12:977413|977573 hsa-miR-6779-5p 1 0 0
chr12:977413|977573 hsa-miR-6797-5p 1 0 0
chr12:977413|977573 hsa-miR-4728-5p 1 1 0
chr12:977413|977573 hsa-miR-5196-5p 1 0 0
chr12:977413|977573 hsa-miR-6780b-5p 1 0 0
chr12:977413|977573 hsa-miR-328-5p 1 0 0
chr12:977413|977573 hsa-miR-4632-5p 1 0 0
chr12:977413|977573 hsa-miR-4649-5p 1 0 0
chr12:977413|977573 hsa-miR-6794-5p 1 0 0
chr12:977413|977573 hsa-miR-6795-5p 1 0 0
chr12:977413|977573 hsa-miR-6846-5p 1 0 0
chr12:977413|977573 hsa-miR-6848-5p 1 0 0
chr12:977413|977573 hsa-miR-939-5p 1 0 0
chr12:977413|977573 hsa-miR-6856-5p 1 0 0
chr12:977413|977573 hsa-miR-1285-3p 1 0 0
chr12:977413|977573 hsa-miR-3679-5p 1 0 0
chr12:977413|977573 hsa-miR-4716-3p 1 0 0
chr12:977413|977573 hsa-miR-6750-5p 1 0 0
chr12:977413|977573 hsa-miR-5581-5p 0 1 0
chr12:977413|977573 hsa-miR-3619-5p 1 0 0
chr12:977413|977573 hsa-miR-4645-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:977413|977573
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MLAWPCPLRKVKLHHFKFLPRSCCPQAQDVSCLLGKFPLPFDQLPDICLAV
Nucleotide Sequence ATGCTTGCCTGGCCATGTCCCCTGAGGAAGGTCAAACTCCACCATTTCAAGTTCTTACCAAGAAGTTGTTGCCCACAAGCCCAAGATGTCTCCTGTTTATTAGGAAAATTTCCCCTCCCCTTTGACCAGCTGCCTGACATTTGCCTGGCAGTC
CircID chr12:977413|977573
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MAMSPEEGQTPPFQVLTKKLLPTSPRCLLFIRKISPPL
Nucleotide Sequence CTGGCCATGTCCCCTGAGGAAGGTCAAACTCCACCATTTCAAGTTCTTACCAAGAAGTTGTTGCCCACAAGCCCAAGATGTCTCCTGTTTATTAGGAAAATTTCCCCTCCCCTTTGA
CircID chr12:977413|977573
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MSGSWSKGRGNFPNKQETSWACGQQLLGKNLKWWSLTFLRGHGQASMV
Nucleotide Sequence ATGTCAGGCAGCTGGTCAAAGGGGAGGGGAAATTTTCCTAATAAACAGGAGACATCTTGGGCTTGTGGGCAACAACTTCTTGGTAAGAACTTGAAATGGTGGAGTTTGACCTTCCTCAGGGGACATGGCCAGGCAAGCATGGTA
CircID chr12:977413|977573
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MPGKCQAAGQRGGEIFLINRRHLGLVGNNFLVRT
Nucleotide Sequence CTGCCAGGCAAATGTCAGGCAGCTGGTCAAAGGGGAGGGGAAATTTTCCTAATAAACAGGAGACATCTTGGGCTTGTGGGCAACAACTTCTTGGTAAGAACTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab