CircRNA Information

General Information
circRNA Basic Information
CircID chr12:98601171|98601494
Strand +
CircType exon
Host Gene ENSG00000075415.11;
Algorism CIRI2;
Sequence TCTGGCATCTCGGGTGGAGGAGGGCGAGGAAGTCTGAAGTAGACCTTCACGGAGTCATAGATAAACCACTGTAGTGCAGTCAGGGTACCAATCATGATGATACGGGCAAACAGTCCCTTCCATACACCTGGTTCAAACAGGAAAAGCAAATGAAAAAAATGCAACATATCCAAAACTGTTGTTCTTTCTTTCAAGAAAAAAACATCATCCTACCTTTAAATCCAAGTCTCTTGAGGACCAGAGAAGCACTGCTACCTTTTTCTTTATTCAACACAGATACCACAGAATCAGCAGGGTGAGAAACAATTGCACAAAAGACTCCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:98601171|98601494 hsa-miR-19a-5p 0 0 1
chr12:98601171|98601494 hsa-miR-19a-3p 0 0 1
chr12:98601171|98601494 hsa-miR-33a-5p 0 0 1
chr12:98601171|98601494 hsa-miR-33a-3p 0 0 1
chr12:98601171|98601494 hsa-miR-10a-5p 0 0 1
chr12:98601171|98601494 hsa-miR-10a-3p 0 0 1
chr12:98601171|98601494 hsa-miR-10b-5p 0 0 1
chr12:98601171|98601494 hsa-miR-10b-3p 0 0 1
chr12:98601171|98601494 hsa-miR-186-5p 0 0 1
chr12:98601171|98601494 hsa-miR-186-3p 0 0 1
chr12:98601171|98601494 hsa-miR-370-5p 0 0 1
chr12:98601171|98601494 hsa-miR-370-3p 0 0 1
chr12:98601171|98601494 hsa-miR-326 0 0 1
chr12:98601171|98601494 hsa-miR-335-5p 0 0 1
chr12:98601171|98601494 hsa-miR-335-3p 0 0 1
chr12:98601171|98601494 hsa-miR-433-5p 0 0 1
chr12:98601171|98601494 hsa-miR-433-3p 0 0 1
chr12:98601171|98601494 hsa-miR-452-5p 0 0 1
chr12:98601171|98601494 hsa-miR-452-3p 0 0 1
chr12:98601171|98601494 hsa-miR-488-5p 0 0 1
chr12:98601171|98601494 hsa-miR-488-3p 0 0 1
chr12:98601171|98601494 hsa-miR-493-5p 0 0 1
chr12:98601171|98601494 hsa-miR-493-3p 0 0 1
chr12:98601171|98601494 hsa-miR-520f-5p 0 0 1
chr12:98601171|98601494 hsa-miR-520f-3p 0 0 1
chr12:98601171|98601494 hsa-miR-526b-5p 0 0 1
chr12:98601171|98601494 hsa-miR-526b-3p 0 0 1
chr12:98601171|98601494 hsa-miR-578 0 0 1
chr12:98601171|98601494 hsa-miR-579-5p 0 0 1
chr12:98601171|98601494 hsa-miR-579-3p 0 0 1
chr12:98601171|98601494 hsa-miR-617 0 0 1
chr12:98601171|98601494 hsa-miR-33b-5p 0 0 1
chr12:98601171|98601494 hsa-miR-33b-3p 0 0 1
chr12:98601171|98601494 hsa-miR-653-5p 0 0 1
chr12:98601171|98601494 hsa-miR-653-3p 0 0 1
chr12:98601171|98601494 hsa-miR-890 0 0 1
chr12:98601171|98601494 hsa-miR-190b-5p 0 0 1
chr12:98601171|98601494 hsa-miR-190b-3p 0 0 1
chr12:98601171|98601494 hsa-miR-924 0 0 1
chr12:98601171|98601494 hsa-miR-934 0 0 1
chr12:98601171|98601494 hsa-miR-942-5p 0 0 1
chr12:98601171|98601494 hsa-miR-942-3p 0 0 1
chr12:98601171|98601494 hsa-miR-1229-5p 0 0 1
chr12:98601171|98601494 hsa-miR-1229-3p 0 0 1
chr12:98601171|98601494 hsa-miR-1238-5p 0 0 1
chr12:98601171|98601494 hsa-miR-1238-3p 0 0 1
chr12:98601171|98601494 hsa-miR-1290 0 0 1
chr12:98601171|98601494 hsa-miR-1249-5p 0 0 1
chr12:98601171|98601494 hsa-miR-1249-3p 0 0 1
chr12:98601171|98601494 hsa-miR-1261 0 0 1
chr12:98601171|98601494 hsa-miR-1263 1 1 1
chr12:98601171|98601494 hsa-miR-548m 0 0 1
chr12:98601171|98601494 hsa-miR-1265 0 0 1
chr12:98601171|98601494 hsa-miR-140-5p 0 1 1
chr12:98601171|98601494 hsa-miR-139-5p 0 0 1
chr12:98601171|98601494 hsa-miR-1289 0 0 1
chr12:98601171|98601494 hsa-miR-509-3p 0 1 1
chr12:98601171|98601494 hsa-miR-299-5p 0 0 1
chr12:98601171|98601494 hsa-miR-330-5p 0 0 1
chr12:98601171|98601494 hsa-miR-876-5p 0 0 1
chr12:98601171|98601494 hsa-miR-19b 0 0 1
chr12:98601171|98601494 hsa-miR-190 0 0 1
chr12:98601171|98601494 hsa-miR-1291 1 0 0
chr12:98601171|98601494 hsa-miR-1282 0 1 0
chr12:98601171|98601494 hsa-miR-4259 1 0 0
chr12:98601171|98601494 hsa-miR-4268 1 1 0
chr12:98601171|98601494 hsa-miR-4290 0 1 0
chr12:98601171|98601494 hsa-miR-3714 1 1 0
chr12:98601171|98601494 hsa-miR-3689f 1 0 0
chr12:98601171|98601494 hsa-miR-4654 1 0 0
chr12:98601171|98601494 hsa-miR-5193 1 1 0
chr12:98601171|98601494 hsa-miR-9900 1 0 0
chr12:98601171|98601494 hsa-miR-149-5p 1 0 0
chr12:98601171|98601494 hsa-miR-6892-3p 1 0 0
chr12:98601171|98601494 hsa-miR-3934-5p 0 1 0
chr12:98601171|98601494 hsa-miR-6807-5p 0 1 0
chr12:98601171|98601494 hsa-miR-6867-5p 1 0 0
chr12:98601171|98601494 hsa-miR-4653-3p 1 0 0
chr12:98601171|98601494 hsa-miR-6726-3p 0 1 0
chr12:98601171|98601494 hsa-miR-1915-5p 1 1 0
chr12:98601171|98601494 hsa-miR-4793-3p 0 1 0
chr12:98601171|98601494 hsa-miR-6803-3p 1 0 0
chr12:98601171|98601494 hsa-let-7b-5p 1 0 0
chr12:98601171|98601494 hsa-miR-3614-5p 0 1 0
chr12:98601171|98601494 hsa-miR-4445-5p 1 0 0
chr12:98601171|98601494 hsa-miR-149-3p 1 0 0
chr12:98601171|98601494 hsa-miR-4776-5p 1 1 0
chr12:98601171|98601494 hsa-miR-7152-3p 1 1 0
chr12:98601171|98601494 hsa-let-7c-5p 1 0 0
chr12:98601171|98601494 hsa-let-7e-5p 0 1 0
chr12:98601171|98601494 hsa-miR-6499-3p 0 1 0
chr12:98601171|98601494 hsa-miR-4687-5p 1 0 0
chr12:98601171|98601494 hsa-miR-4732-3p 0 1 0
chr12:98601171|98601494 hsa-miR-34a-5p 1 1 0
chr12:98601171|98601494 hsa-miR-6886-3p 1 0 0
chr12:98601171|98601494 hsa-miR-6880-3p 1 0 0
chr12:98601171|98601494 hsa-miR-7152-5p 0 1 0
chr12:98601171|98601494 hsa-miR-6865-5p 1 0 0
chr12:98601171|98601494 hsa-miR-6779-5p 1 1 0
chr12:98601171|98601494 hsa-miR-4769-5p 1 0 0
chr12:98601171|98601494 hsa-miR-6862-3p 0 1 0
chr12:98601171|98601494 hsa-miR-10401-3p 1 1 0
chr12:98601171|98601494 hsa-miR-504-5p 0 1 0
chr12:98601171|98601494 hsa-miR-4691-5p 0 1 0
chr12:98601171|98601494 hsa-miR-520d-3p 1 0 0
chr12:98601171|98601494 hsa-miR-6504-5p 0 1 0
chr12:98601171|98601494 hsa-miR-6824-3p 0 1 0
chr12:98601171|98601494 hsa-miR-6764-3p 0 1 0
chr12:98601171|98601494 hsa-miR-301a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:98601171|98601494
ORF Type ORF1
Protein Length 65
Nucleotide Length 195
Protein Sequence MVQTGKANEKNATYPKLLFFLSRKKHHPTFKSKSLEDQRSTATFFFIQHRYHRISRVRNNCTKDS
Nucleotide Sequence CTGGTTCAAACAGGAAAAGCAAATGAAAAAAATGCAACATATCCAAAACTGTTGTTCTTTCTTTCAAGAAAAAAACATCATCCTACCTTTAAATCCAAGTCTCTTGAGGACCAGAGAAGCACTGCTACCTTTTTCTTTATTCAACACAGATACCACAGAATCAGCAGGGTGAGAAACAATTGCACAAAAGACTCC
CircID chr12:98601171|98601494
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MKKMQHIQNCCSFFQEKNIILPLNPSLLRTREALLPFSLFNTDTTESAG
Nucleotide Sequence ATGAAAAAAATGCAACATATCCAAAACTGTTGTTCTTTCTTTCAAGAAAAAAACATCATCCTACCTTTAAATCCAAGTCTCTTGAGGACCAGAGAAGCACTGCTACCTTTTTCTTTATTCAACACAGATACCACAGAATCAGCAGGGTGA
CircID chr12:98601171|98601494
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MKERTTVLDMLHFFHLLFLFEPGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMP
Nucleotide Sequence TTGAAAGAAAGAACAACAGTTTTGGATATGTTGCATTTTTTTCATTTGCTTTTCCTGTTTGAACCAGGTGTATGGAAGGGACTGTTTGCCCGTATCATCATGATTGGTACCCTGACTGCACTACAGTGGTTTATCTATGACTCCGTGAAGGTCTACTTCAGACTTCCTCGCCCTCCTCCACCCGAGATGCCA
CircID chr12:98601171|98601494
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MNKEKGSSASLVLKRLGFKGRMMFFS
Nucleotide Sequence TTGAATAAAGAAAAAGGTAGCAGTGCTTCTCTGGTCCTCAAGAGACTTGGATTTAAAGGTAGGATGATGTTTTTTTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab