CircRNA Information

General Information
circRNA Basic Information
CircID chr13:109560401|109571158
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTTATCTGGCCTCCACTCCTGGGTCCTGAACTCTGTGAGGAAAGGACTTCGTACTATTCAGCCTTGAATTCCCAGGGTTCACATTGTGTCTTCAGTTTGTTTTTTATCTTCCTCATTTTCATCTTCTTTACTTCTTCATCTGTCCCCATGTTTAATTCTGTCCTTCTCTTTTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:109560401|109571158 hsa-miR-186-5p 0 0 1
chr13:109560401|109571158 hsa-miR-186-3p 0 0 1
chr13:109560401|109571158 hsa-miR-495-5p 0 0 1
chr13:109560401|109571158 hsa-miR-495-3p 0 0 1
chr13:109560401|109571158 hsa-miR-577 0 0 1
chr13:109560401|109571158 hsa-miR-650 0 0 1
chr13:109560401|109571158 hsa-miR-665 1 1 1
chr13:109560401|109571158 hsa-miR-1238-5p 0 0 1
chr13:109560401|109571158 hsa-miR-1238-3p 0 0 1
chr13:109560401|109571158 hsa-miR-768-3p 0 0 1
chr13:109560401|109571158 hsa-miR-184 1 0 0
chr13:109560401|109571158 hsa-miR-765 1 0 0
chr13:109560401|109571158 hsa-miR-711 1 1 0
chr13:109560401|109571158 hsa-miR-3138 1 0 0
chr13:109560401|109571158 hsa-miR-3154 1 0 0
chr13:109560401|109571158 hsa-miR-3175 1 0 0
chr13:109560401|109571158 hsa-miR-4298 1 1 0
chr13:109560401|109571158 hsa-miR-4281 1 0 0
chr13:109560401|109571158 hsa-miR-3929 0 1 0
chr13:109560401|109571158 hsa-miR-4428 1 0 0
chr13:109560401|109571158 hsa-miR-4434 1 1 0
chr13:109560401|109571158 hsa-miR-4436a 1 0 0
chr13:109560401|109571158 hsa-miR-4449 1 0 0
chr13:109560401|109571158 hsa-miR-4476 1 0 0
chr13:109560401|109571158 hsa-miR-2392 1 0 0
chr13:109560401|109571158 hsa-miR-4516 1 0 0
chr13:109560401|109571158 hsa-miR-4647 1 0 0
chr13:109560401|109571158 hsa-miR-4688 1 0 0
chr13:109560401|109571158 hsa-miR-4689 1 0 0
chr13:109560401|109571158 hsa-miR-4739 1 0 0
chr13:109560401|109571158 hsa-miR-5090 1 0 0
chr13:109560401|109571158 hsa-miR-5093 1 0 0
chr13:109560401|109571158 hsa-miR-5703 1 0 0
chr13:109560401|109571158 hsa-miR-6088 1 0 0
chr13:109560401|109571158 hsa-miR-7515 1 0 0
chr13:109560401|109571158 hsa-miR-8060 0 1 0
chr13:109560401|109571158 hsa-miR-8066 0 1 0
chr13:109560401|109571158 hsa-miR-8085 1 0 0
chr13:109560401|109571158 hsa-miR-8089 1 1 0
chr13:109560401|109571158 hsa-miR-12126 1 0 0
chr13:109560401|109571158 hsa-miR-4433b-3p 0 1 0
chr13:109560401|109571158 hsa-miR-6840-3p 1 0 0
chr13:109560401|109571158 hsa-miR-1247-3p 1 1 0
chr13:109560401|109571158 hsa-miR-4433a-3p 1 1 0
chr13:109560401|109571158 hsa-miR-6894-5p 1 0 0
chr13:109560401|109571158 hsa-miR-125a-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6510-5p 1 0 0
chr13:109560401|109571158 hsa-miR-1236-5p 1 0 0
chr13:109560401|109571158 hsa-miR-7851-3p 1 0 0
chr13:109560401|109571158 hsa-miR-7847-3p 0 1 0
chr13:109560401|109571158 hsa-miR-6730-5p 1 0 0
chr13:109560401|109571158 hsa-miR-7154-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6890-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6727-5p 1 0 0
chr13:109560401|109571158 hsa-miR-7845-5p 1 0 0
chr13:109560401|109571158 hsa-miR-3605-5p 1 1 0
chr13:109560401|109571158 hsa-miR-6798-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6770-5p 1 1 0
chr13:109560401|109571158 hsa-miR-3126-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6760-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6810-5p 1 1 0
chr13:109560401|109571158 hsa-miR-5088-5p 1 0 0
chr13:109560401|109571158 hsa-miR-204-3p 0 1 0
chr13:109560401|109571158 hsa-miR-4717-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6834-5p 1 0 0
chr13:109560401|109571158 hsa-miR-149-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6878-5p 1 0 0
chr13:109560401|109571158 hsa-miR-5584-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4652-5p 1 0 0
chr13:109560401|109571158 hsa-miR-670-3p 0 1 0
chr13:109560401|109571158 hsa-miR-6832-5p 1 1 0
chr13:109560401|109571158 hsa-miR-302c-5p 1 0 0
chr13:109560401|109571158 hsa-miR-3124-3p 0 1 0
chr13:109560401|109571158 hsa-miR-4520-3p 1 0 0
chr13:109560401|109571158 hsa-miR-1273h-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6870-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6743-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6722-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6763-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6797-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6875-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6879-5p 1 0 0
chr13:109560401|109571158 hsa-miR-5196-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6780b-5p 1 0 0
chr13:109560401|109571158 hsa-miR-328-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4632-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4685-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4726-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4749-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6735-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6794-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6795-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6846-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6848-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6858-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6887-5p 1 1 0
chr13:109560401|109571158 hsa-miR-6889-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4436b-3p 1 0 0
chr13:109560401|109571158 hsa-miR-6845-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6885-5p 1 0 0
chr13:109560401|109571158 hsa-miR-1266-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6511a-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6758-5p 1 1 0
chr13:109560401|109571158 hsa-miR-6856-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6773-5p 1 0 0
chr13:109560401|109571158 hsa-miR-4646-5p 0 1 0
chr13:109560401|109571158 hsa-miR-4716-3p 1 0 0
chr13:109560401|109571158 hsa-miR-4667-5p 0 1 0
chr13:109560401|109571158 hsa-miR-6791-5p 1 0 0
chr13:109560401|109571158 hsa-miR-6764-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr13:109560401|109571158
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MGPELCEERTSYYSALNSQGSHCVFSLFFIFLIFIFFTSSSVPMFNSVLLFS
Nucleotide Sequence CTGGGTCCTGAACTCTGTGAGGAAAGGACTTCGTACTATTCAGCCTTGAATTCCCAGGGTTCACATTGTGTCTTCAGTTTGTTTTTTATCTTCCTCATTTTCATCTTCTTTACTTCTTCATCTGTCCCCATGTTTAATTCTGTCCTTCTCTTTTCT
CircID chr13:109560401|109571158
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MGTDEEVKKMKMRKIKNKLKTQCEPWEFKAE
Nucleotide Sequence ATGGGGACAGATGAAGAAGTAAAGAAGATGAAAATGAGGAAGATAAAAAACAAACTGAAGACACAATGTGAACCCTGGGAATTCAAGGCTGAATAG
CircID chr13:109560401|109571158
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MFFIFLIFIFFTSSSVPMFNSVLLFS
Nucleotide Sequence TTGTTTTTTATCTTCCTCATTTTCATCTTCTTTACTTCTTCATCTGTCCCCATGTTTAATTCTGTCCTTCTCTTTTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab