CircRNA Information

General Information
circRNA Basic Information
CircID chr13:109755812|109756132
Strand -
CircType exon
Host Gene ENSG00000185950.8;
Algorism CIRI2;
Sequence CCCCGCCACGGAAATCCGGCTTTACCTTGAACTGAGGTAGGACTGTGGTCGTTTTGAGTGTAAGCCAGTAAATACCAGATTTTACCACTTCCATAGGTACGGGTGCACTCTCCTAGCATGCTGAGGGTTATATCTGCTTTGCCAAAAGGAAAAGAAGAAGAAATTAAAAGACACTGGCCACAATTTAAGAAGGCCAATGAAAACATCCAATTTTCTTGAGAATAACTTCTTCAGCTAATTTTGTTAAAACAAAACAAAACAAAACGCAAACAGCACAATGATGAATGCCCCATCCGGGAACAAGGGAAAGAGGCAGGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:109755812|109756132 hsa-miR-96-5p 0 0 1
chr13:109755812|109756132 hsa-miR-96-3p 0 0 1
chr13:109755812|109756132 hsa-miR-99a-5p 0 0 1
chr13:109755812|109756132 hsa-miR-99a-3p 0 0 1
chr13:109755812|109756132 hsa-miR-100-5p 0 0 1
chr13:109755812|109756132 hsa-miR-100-3p 0 0 1
chr13:109755812|109756132 hsa-miR-182-5p 0 0 1
chr13:109755812|109756132 hsa-miR-182-3p 0 0 1
chr13:109755812|109756132 hsa-miR-204-5p 0 0 1
chr13:109755812|109756132 hsa-miR-204-3p 0 0 1
chr13:109755812|109756132 hsa-miR-211-5p 0 0 1
chr13:109755812|109756132 hsa-miR-211-3p 0 0 1
chr13:109755812|109756132 hsa-miR-99b-5p 0 0 1
chr13:109755812|109756132 hsa-miR-99b-3p 0 0 1
chr13:109755812|109756132 hsa-miR-410-5p 0 0 1
chr13:109755812|109756132 hsa-miR-410-3p 0 0 1
chr13:109755812|109756132 hsa-miR-511-5p 0 0 1
chr13:109755812|109756132 hsa-miR-511-3p 0 0 1
chr13:109755812|109756132 hsa-miR-495-5p 0 0 1
chr13:109755812|109756132 hsa-miR-495-3p 0 0 1
chr13:109755812|109756132 hsa-miR-193b-5p 0 0 1
chr13:109755812|109756132 hsa-miR-193b-3p 0 0 1
chr13:109755812|109756132 hsa-miR-623 0 0 1
chr13:109755812|109756132 hsa-miR-1323 0 0 1
chr13:109755812|109756132 hsa-miR-1271-5p 0 0 1
chr13:109755812|109756132 hsa-miR-1271-3p 0 0 1
chr13:109755812|109756132 hsa-miR-888-5p 0 0 1
chr13:109755812|109756132 hsa-miR-888-3p 0 0 1
chr13:109755812|109756132 hsa-miR-892b 0 0 1
chr13:109755812|109756132 hsa-miR-663b 0 0 1
chr13:109755812|109756132 hsa-miR-1248 0 0 1
chr13:109755812|109756132 hsa-miR-548o-3p 0 0 1
chr13:109755812|109756132 hsa-miR-513c-5p 0 0 1
chr13:109755812|109756132 hsa-miR-513c-3p 0 0 1
chr13:109755812|109756132 hsa-miR-548o 0 0 1
chr13:109755812|109756132 hsa-miR-486-3p 0 0 1
chr13:109755812|109756132 hsa-miR-199a-5p 0 0 1
chr13:109755812|109756132 hsa-miR-330-3p 0 1 1
chr13:109755812|109756132 hsa-miR-140-3p 0 0 1
chr13:109755812|109756132 hsa-miR-199b-5p 0 0 1
chr13:109755812|109756132 hsa-miR-876-5p 0 0 1
chr13:109755812|109756132 hsa-miR-193a-3p 0 0 1
chr13:109755812|109756132 hsa-miR-218 0 0 1
chr13:109755812|109756132 hsa-miR-663 0 0 1
chr13:109755812|109756132 hsa-miR-1470 1 0 0
chr13:109755812|109756132 hsa-miR-3146 0 1 0
chr13:109755812|109756132 hsa-miR-4281 1 0 0
chr13:109755812|109756132 hsa-miR-4657 1 0 0
chr13:109755812|109756132 hsa-miR-5192 0 1 0
chr13:109755812|109756132 hsa-miR-548ba 0 1 0
chr13:109755812|109756132 hsa-miR-6747-3p 0 1 0
chr13:109755812|109756132 hsa-miR-6089 1 0 0
chr13:109755812|109756132 hsa-miR-652-5p 1 0 0
chr13:109755812|109756132 hsa-miR-6804-3p 1 1 0
chr13:109755812|109756132 hsa-miR-501-5p 1 0 0
chr13:109755812|109756132 hsa-miR-3140-3p 0 1 0
chr13:109755812|109756132 hsa-miR-130b-5p 0 1 0
chr13:109755812|109756132 hsa-miR-6838-3p 0 1 0
chr13:109755812|109756132 hsa-miR-6733-3p 0 1 0
chr13:109755812|109756132 hsa-miR-6756-5p 1 0 0
chr13:109755812|109756132 hsa-miR-6851-5p 1 0 0
chr13:109755812|109756132 hsa-miR-6862-5p 1 0 0
chr13:109755812|109756132 hsa-miR-6766-5p 1 0 0
chr13:109755812|109756132 hsa-miR-320a-3p 1 0 0
chr13:109755812|109756132 hsa-miR-6781-3p 0 1 0
chr13:109755812|109756132 hsa-miR-4659b-3p 0 1 0
chr13:109755812|109756132 hsa-miR-373-5p 0 1 0
chr13:109755812|109756132 hsa-miR-548ag 0 1 0
chr13:109755812|109756132 hsa-miR-371b-5p 0 1 0
chr13:109755812|109756132 hsa-miR-616-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr13:109755812|109756132
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MLRVISALPKGKEEEIKRHWPQFKKANENIQFS
Nucleotide Sequence ATGCTGAGGGTTATATCTGCTTTGCCAAAAGGAAAAGAAGAAGAAATTAAAAGACACTGGCCACAATTTAAGAAGGCCAATGAAAACATCCAATTTTCTTGA

CircID chr13:109755812|109756132
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MLKQNKTKRKQHNDECPIREQGKEAGD
Nucleotide Sequence TTGTTAAAACAAAACAAAACAAAACGCAAACAGCACAATGATGAATGCCCCATCCGGGAACAAGGGAAAGAGGCAGGTGAC

CircID chr13:109755812|109756132
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MLCQKEKKKKLKDTGHNLRRPMKTSNFLENNFFS
Nucleotide Sequence CTGCTTTGCCAAAAGGAAAAGAAGAAGAAATTAAAAGACACTGGCCACAATTTAAGAAGGCCAATGAAAACATCCAATTTTCTTGAGAATAACTTCTTCAGCTAA

CircID chr13:109755812|109756132
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MKKLFSRKLDVFIGLLKLWPVSFNFFFFSFWQSRYNPQHARRVHPYLWKW
Nucleotide Sequence CTGAAGAAGTTATTCTCAAGAAAATTGGATGTTTTCATTGGCCTTCTTAAATTGTGGCCAGTGTCTTTTAATTTCTTCTTCTTTTCCTTTTGGCAAAGCAGATATAACCCTCAGCATGCTAGGAGAGTGCACCCGTACCTATGGAAGTGGTAA

CircID chr13:109755812|109756132
ORF Type ORF5
Protein Length 68
Nucleotide Length 204
Protein Sequence MFSLAFLNCGQCLLISSSFPFGKADITLSMLGECTRTYGSGKIWYLLAYTQNDHSPTSVQGKAGFPWR
Nucleotide Sequence ATGTTTTCATTGGCCTTCTTAAATTGTGGCCAGTGTCTTTTAATTTCTTCTTCTTTTCCTTTTGGCAAAGCAGATATAACCCTCAGCATGCTAGGAGAGTGCACCCGTACCTATGGAAGTGGTAAAATCTGGTATTTACTGGCTTACACTCAAAACGACCACAGTCCTACCTCAGTTCAAGGTAAAGCCGGATTTCCGTGGCGG

CircID chr13:109755812|109756132
ORF Type ORF6
Protein Length 43
Nucleotide Length 132
Protein Sequence MPLSLVPGWGIHHCAVCVLFCFVLTKLAEEVILKKIGCFHWPS
Nucleotide Sequence CTGCCTCTTTCCCTTGTTCCCGGATGGGGCATTCATCATTGTGCTGTTTGCGTTTTGTTTTGTTTTGTTTTAACAAAATTAGCTGAAGAAGTTATTCTCAAGAAAATTGGATGTTTTCATTGGCCTTCTTAA

CircID chr13:109755812|109756132
ORF Type ORF7
Protein Length 31
Nucleotide Length 93
Protein Sequence MEVVKSGIYWLTLKTTTVLPQFKVKPDFRGG
Nucleotide Sequence ATGGAAGTGGTAAAATCTGGTATTTACTGGCTTACACTCAAAACGACCACAGTCCTACCTCAGTTCAAGGTAAAGCCGGATTTCCGTGGCGGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites