CircRNA Information

General Information
circRNA Basic Information
CircID chr13:110482552|110482659
Strand +
CircType exon
Host Gene ENSG00000134871.16;
Algorism CIRI2;
Sequence CTTTAAAACCTGGCTCACCAGCCAGACCCTTCAGACCGGGTATTCCGAAAAATCCAGCCTCGCCTTTGCTCCCTGGAAACCCGGGTCTCCCTTTGAGTCCAGGCATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:110482552|110482659 hsa-miR-149-5p 0 0 1
chr13:110482552|110482659 hsa-miR-149-3p 0 0 1
chr13:110482552|110482659 hsa-miR-422a 0 1 1
chr13:110482552|110482659 hsa-miR-661 0 0 1
chr13:110482552|110482659 hsa-miR-888-5p 0 0 1
chr13:110482552|110482659 hsa-miR-888-3p 0 0 1
chr13:110482552|110482659 hsa-miR-1182 0 1 1
chr13:110482552|110482659 hsa-miR-1287-5p 0 0 1
chr13:110482552|110482659 hsa-miR-1287-3p 0 0 1
chr13:110482552|110482659 hsa-miR-1290 0 0 1
chr13:110482552|110482659 hsa-miR-485-5p 0 0 1
chr13:110482552|110482659 hsa-miR-941 0 0 1
chr13:110482552|110482659 hsa-miR-876-5p 0 0 1
chr13:110482552|110482659 hsa-miR-378 0 0 1
chr13:110482552|110482659 hsa-miR-138 0 0 1
chr13:110482552|110482659 hsa-miR-1254 0 0 1
chr13:110482552|110482659 hsa-miR-663a 1 0 0
chr13:110482552|110482659 hsa-miR-762 1 0 0
chr13:110482552|110482659 hsa-miR-665 1 0 0
chr13:110482552|110482659 hsa-miR-1268a 1 0 0
chr13:110482552|110482659 hsa-miR-2861 1 0 0
chr13:110482552|110482659 hsa-miR-378b 0 1 0
chr13:110482552|110482659 hsa-miR-3178 1 0 0
chr13:110482552|110482659 hsa-miR-378c 0 1 0
chr13:110482552|110482659 hsa-miR-4270 1 1 0
chr13:110482552|110482659 hsa-miR-3652 1 0 0
chr13:110482552|110482659 hsa-miR-3945 1 0 0
chr13:110482552|110482659 hsa-miR-1268b 1 0 0
chr13:110482552|110482659 hsa-miR-378e 0 1 0
chr13:110482552|110482659 hsa-miR-378f 0 1 0
chr13:110482552|110482659 hsa-miR-4505 1 0 0
chr13:110482552|110482659 hsa-miR-378i 0 1 0
chr13:110482552|110482659 hsa-miR-1587 1 0 0
chr13:110482552|110482659 hsa-miR-4706 1 0 0
chr13:110482552|110482659 hsa-miR-4739 1 0 0
chr13:110482552|110482659 hsa-miR-5787 1 0 0
chr13:110482552|110482659 hsa-miR-6081 1 0 0
chr13:110482552|110482659 hsa-miR-6086 1 0 0
chr13:110482552|110482659 hsa-miR-6090 1 0 0
chr13:110482552|110482659 hsa-miR-6132 1 0 0
chr13:110482552|110482659 hsa-miR-8085 1 0 0
chr13:110482552|110482659 hsa-miR-4747-3p 0 1 0
chr13:110482552|110482659 hsa-miR-6765-5p 1 0 0
chr13:110482552|110482659 hsa-miR-671-5p 1 0 0
chr13:110482552|110482659 hsa-miR-3150a-3p 1 0 0
chr13:110482552|110482659 hsa-miR-125a-3p 1 0 0
chr13:110482552|110482659 hsa-miR-6089 1 0 0
chr13:110482552|110482659 hsa-miR-4695-5p 1 0 0
chr13:110482552|110482659 hsa-miR-4653-3p 1 0 0
chr13:110482552|110482659 hsa-miR-3064-5p 0 1 0
chr13:110482552|110482659 hsa-miR-4755-3p 1 0 0
chr13:110482552|110482659 hsa-miR-185-3p 1 0 0
chr13:110482552|110482659 hsa-miR-6827-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6798-5p 1 1 0
chr13:110482552|110482659 hsa-miR-2467-3p 1 0 0
chr13:110482552|110482659 hsa-miR-7855-5p 1 0 0
chr13:110482552|110482659 hsa-miR-1908-5p 1 0 0
chr13:110482552|110482659 hsa-miR-3690 0 1 0
chr13:110482552|110482659 hsa-miR-6824-5p 1 0 0
chr13:110482552|110482659 hsa-miR-3162-5p 1 1 0
chr13:110482552|110482659 hsa-miR-7113-5p 1 1 0
chr13:110482552|110482659 hsa-miR-6787-5p 1 0 0
chr13:110482552|110482659 hsa-miR-1343-5p 1 0 0
chr13:110482552|110482659 hsa-miR-5001-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6726-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6754-5p 1 1 0
chr13:110482552|110482659 hsa-miR-6813-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6797-5p 1 0 0
chr13:110482552|110482659 hsa-miR-3620-5p 1 0 0
chr13:110482552|110482659 hsa-miR-10396a-5p 1 0 0
chr13:110482552|110482659 hsa-miR-10396b-5p 1 0 0
chr13:110482552|110482659 hsa-miR-4649-5p 1 0 0
chr13:110482552|110482659 hsa-miR-4685-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6729-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6777-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6846-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6848-5p 1 0 0
chr13:110482552|110482659 hsa-miR-6889-5p 1 0 0
chr13:110482552|110482659 hsa-miR-939-5p 1 0 0
chr13:110482552|110482659 hsa-miR-3116 0 1 0
chr13:110482552|110482659 hsa-miR-378a-3p 0 1 0
chr13:110482552|110482659 hsa-miR-6750-5p 1 0 0
chr13:110482552|110482659 hsa-miR-378d 0 1 0
chr13:110482552|110482659 hsa-miR-6839-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:110482552|110482659
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MAHQPDPSDRVFRKIQPRLCSLETRVSL
Nucleotide Sequence CTGGCTCACCAGCCAGACCCTTCAGACCGGGTATTCCGAAAAATCCAGCCTCGCCTTTGCTCCCTGGAAACCCGGGTCTCCCTTTGA
CircID chr13:110482552|110482659
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFK
Nucleotide Sequence ATGCCTGGACTCAAAGGGAGACCCGGGTTTCCAGGGAGCAAAGGCGAGGCTGGATTTTTCGGAATACCCGGTCTGAAGGGTCTGGCTGGTGAGCCAGGTTTTAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab