CircRNA Information

General Information
circRNA Basic Information
CircID chr13:110489455|110491268
Strand +
CircType exon
Host Gene ENSG00000134871.16;
Algorism CIRI2;
Sequence CTTCTGTTCCCTTCTCTCCAAAGAATCCCTTCAGACCTGGTATTCCAGTGGTGCCCCGCTCCCCCTTCAGGCCTGGTCTTCCTGGTAAATTTATAGTGTCCCCGATGTCACCTGTTACATGCAAAAAAGACGGCTAAGAACAGGACTTTCCACTGGGACTTTGTGAGTTTTGCAACTTCTATTTTGTTATATTCCTAACAAGAATAATTTGTTTTAAAATACCTAACAGCACTTGCAGGTCTGAAATTGGCTCACATGCTCAGAGAGCTCTGAATTGTGGACTCCCTGTTTTCACTGGACGGGCAACACTCACCGAAATCACCAGTCGCGCCAATCTCGCCATACAGGCCTGCTCTCCCTGGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:110489455|110491268 hsa-miR-185-5p 0 0 1
chr13:110489455|110491268 hsa-miR-185-3p 0 0 1
chr13:110489455|110491268 hsa-miR-302a-5p 0 0 1
chr13:110489455|110491268 hsa-miR-302a-3p 0 0 1
chr13:110489455|110491268 hsa-miR-302b-5p 0 0 1
chr13:110489455|110491268 hsa-miR-302b-3p 0 0 1
chr13:110489455|110491268 hsa-miR-302c-5p 0 0 1
chr13:110489455|110491268 hsa-miR-302c-3p 0 0 1
chr13:110489455|110491268 hsa-miR-302d-5p 0 0 1
chr13:110489455|110491268 hsa-miR-302d-3p 0 0 1
chr13:110489455|110491268 hsa-miR-372-5p 0 0 1
chr13:110489455|110491268 hsa-miR-372-3p 0 0 1
chr13:110489455|110491268 hsa-miR-373-5p 0 0 1
chr13:110489455|110491268 hsa-miR-373-3p 0 0 1
chr13:110489455|110491268 hsa-miR-410-5p 0 0 1
chr13:110489455|110491268 hsa-miR-410-3p 0 0 1
chr13:110489455|110491268 hsa-miR-489-5p 0 0 1
chr13:110489455|110491268 hsa-miR-489-3p 0 0 1
chr13:110489455|110491268 hsa-miR-495-5p 0 0 1
chr13:110489455|110491268 hsa-miR-495-3p 0 0 1
chr13:110489455|110491268 hsa-miR-520e-5p 0 0 1
chr13:110489455|110491268 hsa-miR-520e-3p 0 0 1
chr13:110489455|110491268 hsa-miR-520b-5p 0 0 1
chr13:110489455|110491268 hsa-miR-520b-3p 0 0 1
chr13:110489455|110491268 hsa-miR-527 0 0 1
chr13:110489455|110491268 hsa-miR-507 0 0 1
chr13:110489455|110491268 hsa-miR-552-5p 0 0 1
chr13:110489455|110491268 hsa-miR-552-3p 0 0 1
chr13:110489455|110491268 hsa-miR-557 0 0 1
chr13:110489455|110491268 hsa-miR-570-5p 0 0 1
chr13:110489455|110491268 hsa-miR-570-3p 0 0 1
chr13:110489455|110491268 hsa-miR-578 0 0 1
chr13:110489455|110491268 hsa-miR-620 0 0 1
chr13:110489455|110491268 hsa-miR-652-5p 0 0 1
chr13:110489455|110491268 hsa-miR-652-3p 0 0 1
chr13:110489455|110491268 hsa-miR-1323 0 0 1
chr13:110489455|110491268 hsa-miR-744-5p 0 0 1
chr13:110489455|110491268 hsa-miR-744-3p 0 0 1
chr13:110489455|110491268 hsa-miR-939-5p 0 0 1
chr13:110489455|110491268 hsa-miR-939-3p 0 0 1
chr13:110489455|110491268 hsa-miR-944 0 0 1
chr13:110489455|110491268 hsa-miR-1247-5p 0 0 1
chr13:110489455|110491268 hsa-miR-1247-3p 0 0 1
chr13:110489455|110491268 hsa-miR-1258 0 0 1
chr13:110489455|110491268 hsa-miR-548o-3p 0 0 1
chr13:110489455|110491268 hsa-miR-1270 0 0 1
chr13:110489455|110491268 hsa-miR-302e 0 0 1
chr13:110489455|110491268 hsa-miR-1825 0 0 1
chr13:110489455|110491268 hsa-miR-548o 0 0 1
chr13:110489455|110491268 hsa-miR-125a-3p 0 0 1
chr13:110489455|110491268 hsa-miR-129-5p 0 0 1
chr13:110489455|110491268 hsa-miR-512-3p 0 0 1
chr13:110489455|110491268 hsa-miR-542-5p 0 0 1
chr13:110489455|110491268 hsa-miR-199a-5p 0 0 1
chr13:110489455|110491268 hsa-miR-574-5p 0 0 1
chr13:110489455|110491268 hsa-miR-1289 0 1 1
chr13:110489455|110491268 hsa-miR-331-5p 0 0 1
chr13:110489455|110491268 hsa-miR-199b-5p 0 0 1
chr13:110489455|110491268 hsa-miR-520d-3p 0 0 1
chr13:110489455|110491268 hsa-miR-513a-3p 0 0 1
chr13:110489455|110491268 hsa-miR-518a-5p 0 0 1
chr13:110489455|110491268 hsa-miR-520a-3p 0 0 1
chr13:110489455|110491268 hsa-miR-520c-3p 0 0 1
chr13:110489455|110491268 hsa-miR-450b-5p 0 0 1
chr13:110489455|110491268 hsa-miR-7 0 0 1
chr13:110489455|110491268 hsa-miR-9 0 0 1
chr13:110489455|110491268 hsa-miR-768-5p 0 0 1
chr13:110489455|110491268 hsa-miR-194 0 0 1
chr13:110489455|110491268 hsa-miR-663a 1 0 0
chr13:110489455|110491268 hsa-miR-2278 0 1 0
chr13:110489455|110491268 hsa-miR-2861 1 0 0
chr13:110489455|110491268 hsa-miR-3154 1 1 0
chr13:110489455|110491268 hsa-miR-3196 1 0 0
chr13:110489455|110491268 hsa-miR-4306 0 1 0
chr13:110489455|110491268 hsa-miR-4270 0 1 0
chr13:110489455|110491268 hsa-miR-3652 1 0 0
chr13:110489455|110491268 hsa-miR-3659 0 1 0
chr13:110489455|110491268 hsa-miR-4450 1 0 0
chr13:110489455|110491268 hsa-miR-4479 1 0 0
chr13:110489455|110491268 hsa-miR-4488 1 0 0
chr13:110489455|110491268 hsa-miR-4525 1 0 0
chr13:110489455|110491268 hsa-miR-4634 1 1 0
chr13:110489455|110491268 hsa-miR-4644 0 1 0
chr13:110489455|110491268 hsa-miR-4658 0 1 0
chr13:110489455|110491268 hsa-miR-4673 1 0 0
chr13:110489455|110491268 hsa-miR-4706 1 0 0
chr13:110489455|110491268 hsa-miR-4739 1 0 0
chr13:110489455|110491268 hsa-miR-5090 0 1 0
chr13:110489455|110491268 hsa-miR-5190 1 0 0
chr13:110489455|110491268 hsa-miR-5698 1 1 0
chr13:110489455|110491268 hsa-miR-5787 1 0 0
chr13:110489455|110491268 hsa-miR-6081 1 0 0
chr13:110489455|110491268 hsa-miR-6090 0 1 0
chr13:110489455|110491268 hsa-miR-8055 0 1 0
chr13:110489455|110491268 hsa-miR-8074 1 1 0
chr13:110489455|110491268 hsa-miR-8085 1 1 0
chr13:110489455|110491268 hsa-miR-8089 1 0 0
chr13:110489455|110491268 hsa-miR-12118 1 0 0
chr13:110489455|110491268 hsa-miR-12119 1 0 0
chr13:110489455|110491268 hsa-miR-12127 0 1 0
chr13:110489455|110491268 hsa-miR-134-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6734-5p 1 0 0
chr13:110489455|110491268 hsa-miR-139-3p 1 0 0
chr13:110489455|110491268 hsa-miR-4786-5p 0 1 0
chr13:110489455|110491268 hsa-miR-6757-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4755-3p 1 1 0
chr13:110489455|110491268 hsa-miR-6727-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4655-5p 1 0 0
chr13:110489455|110491268 hsa-miR-197-5p 1 0 0
chr13:110489455|110491268 hsa-miR-3151-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6732-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6805-5p 1 0 0
chr13:110489455|110491268 hsa-miR-23a-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6798-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6810-5p 1 0 0
chr13:110489455|110491268 hsa-miR-1226-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6753-5p 1 1 0
chr13:110489455|110491268 hsa-miR-885-3p 1 0 0
chr13:110489455|110491268 hsa-miR-3677-3p 1 0 0
chr13:110489455|110491268 hsa-miR-6749-5p 1 0 0
chr13:110489455|110491268 hsa-miR-149-3p 1 0 0
chr13:110489455|110491268 hsa-miR-6800-5p 0 1 0
chr13:110489455|110491268 hsa-miR-2276-3p 0 1 0
chr13:110489455|110491268 hsa-miR-3191-3p 1 0 0
chr13:110489455|110491268 hsa-miR-4707-5p 1 0 0
chr13:110489455|110491268 hsa-miR-509-3p 1 0 0
chr13:110489455|110491268 hsa-miR-7113-5p 1 1 0
chr13:110489455|110491268 hsa-miR-6838-3p 0 1 0
chr13:110489455|110491268 hsa-miR-499b-5p 0 1 0
chr13:110489455|110491268 hsa-miR-29b-3p 0 1 0
chr13:110489455|110491268 hsa-miR-6816-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6870-5p 1 1 0
chr13:110489455|110491268 hsa-miR-6775-5p 1 0 0
chr13:110489455|110491268 hsa-miR-1343-5p 1 1 0
chr13:110489455|110491268 hsa-miR-6726-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6754-5p 1 1 0
chr13:110489455|110491268 hsa-miR-1249-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6797-5p 1 1 0
chr13:110489455|110491268 hsa-miR-7111-5p 1 0 0
chr13:110489455|110491268 hsa-miR-1915-3p 1 1 0
chr13:110489455|110491268 hsa-miR-10396a-5p 1 0 0
chr13:110489455|110491268 hsa-miR-10396b-5p 1 0 0
chr13:110489455|110491268 hsa-miR-1237-5p 1 0 0
chr13:110489455|110491268 hsa-miR-328-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4632-5p 1 1 0
chr13:110489455|110491268 hsa-miR-4685-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4726-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4745-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4749-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6777-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6794-5p 1 1 0
chr13:110489455|110491268 hsa-miR-6795-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6848-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6883-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6889-5p 1 1 0
chr13:110489455|110491268 hsa-miR-4758-5p 1 0 0
chr13:110489455|110491268 hsa-miR-365a-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6731-5p 1 1 0
chr13:110489455|110491268 hsa-miR-4716-3p 0 1 0
chr13:110489455|110491268 hsa-miR-6785-5p 1 0 0
chr13:110489455|110491268 hsa-miR-323b-5p 1 0 0
chr13:110489455|110491268 hsa-miR-3619-5p 1 0 0
chr13:110489455|110491268 hsa-miR-6811-5p 1 0 0
chr13:110489455|110491268 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:110489455|110491268
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MFPSLQRIPSDLVFQWCPAPPSGLVFLVNL
Nucleotide Sequence CTGTTCCCTTCTCTCCAAAGAATCCCTTCAGACCTGGTATTCCAGTGGTGCCCCGCTCCCCCTTCAGGCCTGGTCTTCCTGGTAAATTTATAG
CircID chr13:110489455|110491268
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MLHAKKTAKNRTFHWDFVSFATSILLYS
Nucleotide Sequence CTGTTACATGCAAAAAAGACGGCTAAGAACAGGACTTTCCACTGGGACTTTGTGAGTTTTGCAACTTCTATTTTGTTATATTCCTAA
CircID chr13:110489455|110491268
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MFSLDGQHSPKSPVAPISPYRPALPGA
Nucleotide Sequence CTGTTTTCACTGGACGGGCAACACTCACCGAAATCACCAGTCGCGCCAATCTCGCCATACAGGCCTGCTCTCCCTGGGGCA
CircID chr13:110489455|110491268
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MWTPCFHWTGNTHRNHQSRQSRHTGLLSLGH
Nucleotide Sequence TTGTGGACTCCCTGTTTTCACTGGACGGGCAACACTCACCGAAATCACCAGTCGCGCCAATCTCGCCATACAGGCCTGCTCTCCCTGGGGCAC
CircID chr13:110489455|110491268
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MGLCEFCNFYFVIFLTRIICFKIPNSTCRSEIGSHAQRALNCGLPVFTGRATLTEITSRANLAIQACSPWG
Nucleotide Sequence CTGGGACTTTGTGAGTTTTGCAACTTCTATTTTGTTATATTCCTAACAAGAATAATTTGTTTTAAAATACCTAACAGCACTTGCAGGTCTGAAATTGGCTCACATGCTCAGAGAGCTCTGAATTGTGGACTCCCTGTTTTCACTGGACGGGCAACACTCACCGAAATCACCAGTCGCGCCAATCTCGCCATACAGGCCTGCTCTCCCTGGGGC
CircID chr13:110489455|110491268
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MARLARLVISVSVARPVKTGSPQFRAL
Nucleotide Sequence ATGGCGAGATTGGCGCGACTGGTGATTTCGGTGAGTGTTGCCCGTCCAGTGAAAACAGGGAGTCCACAATTCAGAGCTCTCTGA
CircID chr13:110489455|110491268
ORF Type ORF7
Protein Length 41
Nucleotide Length 123
Protein Sequence MHVTGDIGDTINLPGRPGLKGERGTTGIPGLKGFFGEKGTE
Nucleotide Sequence TTGCATGTAACAGGTGACATCGGGGACACTATAAATTTACCAGGAAGACCAGGCCTGAAGGGGGAGCGGGGCACCACTGGAATACCAGGTCTGAAGGGATTCTTTGGAGAGAAGGGAACAGAA
CircID chr13:110489455|110491268
ORF Type ORF8
Protein Length 31
Nucleotide Length 96
Protein Sequence MYGEIGATGDFGECCPSSENRESTIQSSLSM
Nucleotide Sequence CTGTATGGCGAGATTGGCGCGACTGGTGATTTCGGTGAGTGTTGCCCGTCCAGTGAAAACAGGGAGTCCACAATTCAGAGCTCTCTGAGCATGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab