CircRNA Information

General Information
circRNA Basic Information
CircID chr13:110638292|110638492
Strand +
CircType exon
Host Gene ENSG00000213995.10;
Algorism CIRI2;
Sequence CTCGGCGATCATGTCGGAGGTGGTGGTGGAGCGACCGTGCTTCTGGAAGGCTTGGTGGTTGCACTGCCTGGTGAGAGAGCAGGCGCCAAACGCGGCCACCAGGAGAGGGCTGGACCTGCGGAGAGGGGGACAGCAGGAGGTGTGGGGAAGTGGGCGTCGTGGTCCGGGGGCCGCAGCTACCCTGGGCTCTGGTTTTGACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:110638292|110638492 hsa-miR-22-5p 0 0 1
chr13:110638292|110638492 hsa-miR-22-3p 0 0 1
chr13:110638292|110638492 hsa-miR-148a-5p 0 0 1
chr13:110638292|110638492 hsa-miR-148a-3p 0 0 1
chr13:110638292|110638492 hsa-miR-34a-5p 0 0 1
chr13:110638292|110638492 hsa-miR-34a-3p 0 0 1
chr13:110638292|110638492 hsa-miR-130a-5p 0 0 1
chr13:110638292|110638492 hsa-miR-130a-3p 0 0 1
chr13:110638292|110638492 hsa-miR-152-5p 0 0 1
chr13:110638292|110638492 hsa-miR-152-3p 0 0 1
chr13:110638292|110638492 hsa-miR-301a-5p 0 0 1
chr13:110638292|110638492 hsa-miR-301a-3p 0 0 1
chr13:110638292|110638492 hsa-miR-130b-5p 0 0 1
chr13:110638292|110638492 hsa-miR-130b-3p 0 0 1
chr13:110638292|110638492 hsa-miR-370-5p 0 0 1
chr13:110638292|110638492 hsa-miR-370-3p 0 0 1
chr13:110638292|110638492 hsa-miR-148b-5p 0 0 1
chr13:110638292|110638492 hsa-miR-148b-3p 0 0 1
chr13:110638292|110638492 hsa-miR-449a 0 0 1
chr13:110638292|110638492 hsa-miR-626 0 0 1
chr13:110638292|110638492 hsa-miR-449b-5p 0 0 1
chr13:110638292|110638492 hsa-miR-449b-3p 0 0 1
chr13:110638292|110638492 hsa-miR-1323 0 0 1
chr13:110638292|110638492 hsa-miR-454-5p 0 0 1
chr13:110638292|110638492 hsa-miR-454-3p 0 0 1
chr13:110638292|110638492 hsa-miR-301b-5p 0 0 1
chr13:110638292|110638492 hsa-miR-301b-3p 0 0 1
chr13:110638292|110638492 hsa-miR-1226-5p 0 0 1
chr13:110638292|110638492 hsa-miR-1226-3p 0 0 1
chr13:110638292|110638492 hsa-miR-1228-5p 0 0 1
chr13:110638292|110638492 hsa-miR-1228-3p 0 0 1
chr13:110638292|110638492 hsa-miR-1229-5p 0 0 1
chr13:110638292|110638492 hsa-miR-1229-3p 0 0 1
chr13:110638292|110638492 hsa-miR-548o-3p 0 0 1
chr13:110638292|110638492 hsa-miR-548o 0 0 1
chr13:110638292|110638492 hsa-miR-525-5p 0 0 1
chr13:110638292|110638492 hsa-miR-566 0 0 1
chr13:110638292|110638492 hsa-miR-520a-5p 0 0 1
chr13:110638292|110638492 hsa-miR-34c-5p 0 1 1
chr13:110638292|110638492 hsa-miR-220b 0 0 1
chr13:110638292|110638492 hsa-miR-657 0 1 0
chr13:110638292|110638492 hsa-miR-298 0 1 0
chr13:110638292|110638492 hsa-miR-1976 0 1 0
chr13:110638292|110638492 hsa-miR-4456 0 1 0
chr13:110638292|110638492 hsa-miR-4692 0 1 0
chr13:110638292|110638492 hsa-miR-4767 1 0 0
chr13:110638292|110638492 hsa-miR-8063 0 1 0
chr13:110638292|110638492 hsa-miR-12125 0 1 0
chr13:110638292|110638492 hsa-miR-6720-5p 1 1 0
chr13:110638292|110638492 hsa-miR-6892-3p 0 1 0
chr13:110638292|110638492 hsa-miR-6089 1 0 0
chr13:110638292|110638492 hsa-miR-6840-5p 1 1 0
chr13:110638292|110638492 hsa-miR-6763-3p 1 0 0
chr13:110638292|110638492 hsa-miR-7113-3p 1 0 0
chr13:110638292|110638492 hsa-miR-4667-3p 0 1 0
chr13:110638292|110638492 hsa-miR-6776-3p 0 1 0
chr13:110638292|110638492 hsa-miR-1306-5p 0 1 0
chr13:110638292|110638492 hsa-miR-6786-3p 1 1 0
chr13:110638292|110638492 hsa-miR-1237-3p 1 1 0
chr13:110638292|110638492 hsa-miR-1911-3p 0 1 0
chr13:110638292|110638492 hsa-miR-3619-3p 1 0 0
chr13:110638292|110638492 hsa-miR-6804-3p 1 0 0
chr13:110638292|110638492 hsa-miR-6720-3p 1 0 0
chr13:110638292|110638492 hsa-miR-3180-5p 1 1 0
chr13:110638292|110638492 hsa-miR-3614-3p 0 1 0
chr13:110638292|110638492 hsa-miR-5587-3p 1 0 0
chr13:110638292|110638492 hsa-miR-6789-3p 1 0 0
chr13:110638292|110638492 hsa-miR-3162-3p 1 0 0
chr13:110638292|110638492 hsa-miR-3127-3p 1 1 0
chr13:110638292|110638492 hsa-miR-1915-3p 0 1 0
chr13:110638292|110638492 hsa-miR-449c-5p 0 1 0
chr13:110638292|110638492 hsa-miR-34b-5p 0 1 0
chr13:110638292|110638492 hsa-miR-1271-3p 1 1 0
chr13:110638292|110638492 hsa-miR-324-3p 1 0 0
chr13:110638292|110638492 hsa-miR-6893-3p 0 1 0
chr13:110638292|110638492 hsa-miR-10392-3p 1 1 0
chr13:110638292|110638492 hsa-miR-6512-3p 0 1 0
chr13:110638292|110638492 hsa-miR-5581-5p 0 1 0
chr13:110638292|110638492 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:110638292|110638492
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MEGLVVALPGERAGAKRGHQERAGPAERGTAGGVGKWASWSGGRSYPGLWF
Nucleotide Sequence CTGGAAGGCTTGGTGGTTGCACTGCCTGGTGAGAGAGCAGGCGCCAAACGCGGCCACCAGGAGAGGGCTGGACCTGCGGAGAGGGGGACAGCAGGAGGTGTGGGGAAGTGGGCGTCGTGGTCCGGGGGCCGCAGCTACCCTGGGCTCTGGTTTTGA
CircID chr13:110638292|110638492
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MSEVVVERPCFWKAWWLHCLVREQAPNAATRRGLDLRRGGQQEVWGSGRRGPGAAATLGSGFD
Nucleotide Sequence ATGTCGGAGGTGGTGGTGGAGCGACCGTGCTTCTGGAAGGCTTGGTGGTTGCACTGCCTGGTGAGAGAGCAGGCGCCAAACGCGGCCACCAGGAGAGGGCTGGACCTGCGGAGAGGGGGACAGCAGGAGGTGTGGGGAAGTGGGCGTCGTGGTCCGGGGGCCGCAGCTACCCTGGGCTCTGGTTTTGAC
CircID chr13:110638292|110638492
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MVAAFGACSLTRQCNHQAFQKHGRSTTTSDMIAE
Nucleotide Sequence CTGGTGGCCGCGTTTGGCGCCTGCTCTCTCACCAGGCAGTGCAACCACCAAGCCTTCCAGAAGCACGGTCGCTCCACCACCACCTCCGACATGATCGCCGAG
CircID chr13:110638292|110638492
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MRPPDHDAHFPTPPAVPLSAGPALSWWPRLAPALSPGSATTKPSRSTVAPPPPPT
Nucleotide Sequence CTGCGGCCCCCGGACCACGACGCCCACTTCCCCACACCTCCTGCTGTCCCCCTCTCCGCAGGTCCAGCCCTCTCCTGGTGGCCGCGTTTGGCGCCTGCTCTCTCACCAGGCAGTGCAACCACCAAGCCTTCCAGAAGCACGGTCGCTCCACCACCACCTCCGACATGA
CircID chr13:110638292|110638492
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MLSPSPQVQPSPGGRVWRLLSHQAVQPPSLPEARSLHHHLRHDRR
Nucleotide Sequence CTGCTGTCCCCCTCTCCGCAGGTCCAGCCCTCTCCTGGTGGCCGCGTTTGGCGCCTGCTCTCTCACCAGGCAGTGCAACCACCAAGCCTTCCAGAAGCACGGTCGCTCCACCACCACCTCCGACATGATCGCCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab