CircRNA Information

General Information
circRNA Basic Information
CircID chr13:112882008|112882307
Strand -
CircType exon
Host Gene ENSG00000068650.17;
Algorism CIRI2;
Sequence TGCAGTTCCATCCCAAGTCACAGCTGCCCTAGGTCCCGTGTGGGAATGCTCGTGTGATGGATGGTCCTAAGCCTGTGGAGACTGTGCACGTGCCTCTTCCTGGCCCCCAGCAGGCAAGGAGGGGGGTCACAGGCCTTGCCCTCGAGCATGGCACCCTGGCCGCCTGGACCCAGCACTGTGGTTGTTGAGCCACACCAGTGGCCTCTGGGCATTCGGCTCAACGCAGGAGGGACATTCTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:112882008|112882307 hsa-miR-134-5p 0 0 1
chr13:112882008|112882307 hsa-miR-134-3p 0 0 1
chr13:112882008|112882307 hsa-miR-370-5p 0 0 1
chr13:112882008|112882307 hsa-miR-370-3p 0 0 1
chr13:112882008|112882307 hsa-miR-602 0 1 1
chr13:112882008|112882307 hsa-miR-625-5p 0 0 1
chr13:112882008|112882307 hsa-miR-625-3p 0 0 1
chr13:112882008|112882307 hsa-miR-637 1 1 1
chr13:112882008|112882307 hsa-miR-661 1 1 1
chr13:112882008|112882307 hsa-miR-541-5p 0 0 1
chr13:112882008|112882307 hsa-miR-541-3p 0 0 1
chr13:112882008|112882307 hsa-miR-922 0 0 1
chr13:112882008|112882307 hsa-miR-1179 0 0 1
chr13:112882008|112882307 hsa-miR-1262 0 0 1
chr13:112882008|112882307 hsa-miR-1275 0 1 1
chr13:112882008|112882307 hsa-miR-512-3p 0 0 1
chr13:112882008|112882307 hsa-miR-654-5p 1 1 1
chr13:112882008|112882307 hsa-miR-502-5p 0 1 1
chr13:112882008|112882307 hsa-miR-188-3p 0 1 1
chr13:112882008|112882307 hsa-miR-140-3p 0 1 1
chr13:112882008|112882307 hsa-miR-769-3p 0 0 1
chr13:112882008|112882307 hsa-miR-450b-3p 0 0 1
chr13:112882008|112882307 hsa-miR-1260 0 0 1
chr13:112882008|112882307 hsa-miR-128 0 0 1
chr13:112882008|112882307 hsa-miR-644 0 0 1
chr13:112882008|112882307 hsa-miR-24 0 0 1
chr13:112882008|112882307 hsa-miR-365 0 0 1
chr13:112882008|112882307 hsa-miR-564 1 0 0
chr13:112882008|112882307 hsa-miR-613 0 1 0
chr13:112882008|112882307 hsa-miR-933 1 0 0
chr13:112882008|112882307 hsa-miR-663b 1 0 0
chr13:112882008|112882307 hsa-miR-3164 0 1 0
chr13:112882008|112882307 hsa-miR-3193 0 1 0
chr13:112882008|112882307 hsa-miR-4259 1 0 0
chr13:112882008|112882307 hsa-miR-3937 0 1 0
chr13:112882008|112882307 hsa-miR-4438 0 1 0
chr13:112882008|112882307 hsa-miR-4526 1 0 0
chr13:112882008|112882307 hsa-miR-4688 1 0 0
chr13:112882008|112882307 hsa-miR-4689 1 0 0
chr13:112882008|112882307 hsa-miR-5787 1 0 0
chr13:112882008|112882307 hsa-miR-6069 1 0 0
chr13:112882008|112882307 hsa-miR-6076 1 1 0
chr13:112882008|112882307 hsa-miR-6077 0 1 0
chr13:112882008|112882307 hsa-miR-4731-5p 1 1 0
chr13:112882008|112882307 hsa-miR-3692-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6089 1 0 0
chr13:112882008|112882307 hsa-miR-4722-5p 1 0 0
chr13:112882008|112882307 hsa-miR-197-5p 1 0 0
chr13:112882008|112882307 hsa-miR-1915-5p 1 1 0
chr13:112882008|112882307 hsa-miR-6748-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6827-5p 1 0 0
chr13:112882008|112882307 hsa-miR-6735-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6884-3p 0 1 0
chr13:112882008|112882307 hsa-miR-1226-5p 1 1 0
chr13:112882008|112882307 hsa-miR-2277-3p 0 1 0
chr13:112882008|112882307 hsa-miR-4640-5p 1 1 0
chr13:112882008|112882307 hsa-miR-4667-3p 0 1 0
chr13:112882008|112882307 hsa-miR-3922-5p 0 1 0
chr13:112882008|112882307 hsa-miR-4708-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6811-3p 0 1 0
chr13:112882008|112882307 hsa-miR-660-3p 0 1 0
chr13:112882008|112882307 hsa-miR-3619-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6887-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6826-3p 0 1 0
chr13:112882008|112882307 hsa-miR-5088-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6859-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6767-3p 0 1 0
chr13:112882008|112882307 hsa-let-7a-2-3p 0 1 0
chr13:112882008|112882307 hsa-miR-6808-3p 0 1 0
chr13:112882008|112882307 hsa-miR-10400-5p 1 0 0
chr13:112882008|112882307 hsa-miR-4763-3p 1 0 0
chr13:112882008|112882307 hsa-miR-1343-5p 1 0 0
chr13:112882008|112882307 hsa-miR-6752-5p 1 0 0
chr13:112882008|112882307 hsa-miR-6756-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6803-5p 1 0 0
chr13:112882008|112882307 hsa-miR-6879-5p 0 1 0
chr13:112882008|112882307 hsa-miR-7111-5p 1 0 0
chr13:112882008|112882307 hsa-miR-3127-3p 1 0 0
chr13:112882008|112882307 hsa-miR-1237-5p 1 0 0
chr13:112882008|112882307 hsa-miR-328-5p 1 0 0
chr13:112882008|112882307 hsa-miR-4632-5p 1 1 0
chr13:112882008|112882307 hsa-miR-4685-5p 1 0 0
chr13:112882008|112882307 hsa-miR-4726-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6846-5p 1 0 0
chr13:112882008|112882307 hsa-miR-6848-5p 1 1 0
chr13:112882008|112882307 hsa-miR-6845-5p 0 1 0
chr13:112882008|112882307 hsa-miR-939-5p 1 0 0
chr13:112882008|112882307 hsa-miR-365a-5p 1 0 0
chr13:112882008|112882307 hsa-miR-365b-5p 1 0 0
chr13:112882008|112882307 hsa-miR-3085-5p 1 1 0
chr13:112882008|112882307 hsa-miR-1271-3p 1 1 0
chr13:112882008|112882307 hsa-miR-6736-5p 0 1 0
chr13:112882008|112882307 hsa-miR-7151-3p 1 0 0
chr13:112882008|112882307 hsa-miR-6766-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6762-5p 0 1 0
chr13:112882008|112882307 hsa-miR-4757-5p 0 1 0
chr13:112882008|112882307 hsa-miR-6744-3p 0 1 0
chr13:112882008|112882307 hsa-miR-3681-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:112882008|112882307
ORF Type ORF1
Protein Length 80
Nucleotide Length 240
Protein Sequence MVLSLWRLCTCLFLAPSRQGGGSQALPSSMAPWPPGPSTVVVEPHQWPLGIRLNAGGTFCWPTLRAVMQRPFPQACVFTH
Nucleotide Sequence ATGGTCCTAAGCCTGTGGAGACTGTGCACGTGCCTCTTCCTGGCCCCCAGCAGGCAAGGAGGGGGGTCACAGGCCTTGCCCTCGAGCATGGCACCCTGGCCGCCTGGACCCAGCACTGTGGTTGTTGAGCCACACCAGTGGCCTCTGGGCATTCGGCTCAACGCAGGAGGGACATTCTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCCAC
CircID chr13:112882008|112882307
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MDPALWLLSHTSGLWAFGSTQEGHSAGPPCALSCRGHSPRPVSSP
Nucleotide Sequence CTGGACCCAGCACTGTGGTTGTTGAGCCACACCAGTGGCCTCTGGGCATTCGGCTCAACGCAGGAGGGACATTCTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCC
CircID chr13:112882008|112882307
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MDGPKPVETVHVPLPGPQQARRGVTGLALEHGTLAAWTQHCGC
Nucleotide Sequence ATGGATGGTCCTAAGCCTGTGGAGACTGTGCACGTGCCTCTTCCTGGCCCCCAGCAGGCAAGGAGGGGGGTCACAGGCCTTGCCCTCGAGCATGGCACCCTGGCCGCCTGGACCCAGCACTGTGGTTGTTGA
CircID chr13:112882008|112882307
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MGEWPLHDSAQGGPAECPSCVEPNAQRPLVWLNNHSAGSRRPGCHARGQGL
Nucleotide Sequence CTGGGGGAATGGCCTCTGCATGACAGCGCGCAGGGTGGGCCAGCAGAATGTCCCTCCTGCGTTGAGCCGAATGCCCAGAGGCCACTGGTGTGGCTCAACAACCACAGTGCTGGGTCCAGGCGGCCAGGGTGCCATGCTCGAGGGCAAGGCCTGTGA
CircID chr13:112882008|112882307
ORF Type ORF5
Protein Length 81
Nucleotide Length 246
Protein Sequence MTARRVGQQNVPPALSRMPRGHWCGSTTTVLGPGGQGAMLEGKACDPPPCLLGARKRHVHSLHRLRTIHHTSIPTRDLGQL
Nucleotide Sequence ATGACAGCGCGCAGGGTGGGCCAGCAGAATGTCCCTCCTGCGTTGAGCCGAATGCCCAGAGGCCACTGGTGTGGCTCAACAACCACAGTGCTGGGTCCAGGCGGCCAGGGTGCCATGCTCGAGGGCAAGGCCTGTGACCCCCCTCCTTGCCTGCTGGGGGCCAGGAAGAGGCACGTGCACAGTCTCCACAGGCTTAGGACCATCCATCACACGAGCATTCCCACACGGGACCTAGGGCAGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab