CircRNA Information

General Information
circRNA Basic Information
CircID chr13:112882140|112882348
Strand +
CircType exon
Host Gene ENSG00000068650.17;
Algorism CIRI2;
Sequence GGCTCTTCTCTCCCAGTGACAGCAAAGGCCAATGATGGCAGGTGGGTGAAGACACAGGCCTGGGGGAATGGCCTCTGCATGACAGCGCGCAGGGTGGGCCAGCAGAATGTCCCTCCTGCGTTGAGCCGAATGCCCAGAGGCCACTGGTGTGGCTCAACAACCACAGTGCTGGGTCCAGGCGGCCAGGGTGCCATGCTCGAGGGCAAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:112882140|112882348 hsa-miR-183-5p 0 0 1
chr13:112882140|112882348 hsa-miR-183-3p 0 0 1
chr13:112882140|112882348 hsa-miR-185-5p 0 0 1
chr13:112882140|112882348 hsa-miR-185-3p 0 0 1
chr13:112882140|112882348 hsa-miR-326 -8 1 1
chr13:112882140|112882348 hsa-miR-412-5p 0 0 1
chr13:112882140|112882348 hsa-miR-412-3p 0 0 1
chr13:112882140|112882348 hsa-miR-612 -9 0 1
chr13:112882140|112882348 hsa-miR-626 -3 0 1
chr13:112882140|112882348 hsa-miR-653-5p 0 0 1
chr13:112882140|112882348 hsa-miR-653-3p 0 0 1
chr13:112882140|112882348 hsa-miR-668-5p 0 0 1
chr13:112882140|112882348 hsa-miR-668-3p 0 0 1
chr13:112882140|112882348 hsa-miR-874-5p 0 0 1
chr13:112882140|112882348 hsa-miR-874-3p 0 0 1
chr13:112882140|112882348 hsa-miR-1253 0 0 1
chr13:112882140|112882348 hsa-miR-361-3p -11 1 1
chr13:112882140|112882348 hsa-miR-1224-3p -4 1 1
chr13:112882140|112882348 hsa-miR-330-5p -6 1 1
chr13:112882140|112882348 hsa-miR-1285 0 0 1
chr13:112882140|112882348 hsa-miR-1254 0 0 1
chr13:112882140|112882348 hsa-miR-453 0 0 1
chr13:112882140|112882348 hsa-miR-1263 -17 1 0
chr13:112882140|112882348 hsa-miR-4306 0 1 0
chr13:112882140|112882348 hsa-miR-4780 -8 1 0
chr13:112882140|112882348 hsa-miR-5693 -4 1 0
chr13:112882140|112882348 hsa-miR-8085 1 1 0
chr13:112882140|112882348 hsa-miR-4722-5p -8 1 0
chr13:112882140|112882348 hsa-miR-24-3p -5 1 0
chr13:112882140|112882348 hsa-miR-1915-5p -16 1 0
chr13:112882140|112882348 hsa-miR-6735-3p -11 1 0
chr13:112882140|112882348 hsa-miR-3690 -20 1 0
chr13:112882140|112882348 hsa-miR-6811-3p -10 1 0
chr13:112882140|112882348 hsa-miR-383-3p -7 1 0
chr13:112882140|112882348 hsa-miR-216a-3p -2 1 0
chr13:112882140|112882348 hsa-miR-3620-3p -10 1 0
chr13:112882140|112882348 hsa-miR-4485-5p -15 1 0
chr13:112882140|112882348 hsa-miR-4650-5p -7 1 0
chr13:112882140|112882348 hsa-miR-1249-5p -6 1 0
chr13:112882140|112882348 hsa-miR-6788-5p 0 1 0
chr13:112882140|112882348 hsa-miR-6797-5p -6 1 0
chr13:112882140|112882348 hsa-miR-6754-3p -13 1 0
chr13:112882140|112882348 hsa-miR-3187-5p -4 1 0
chr13:112882140|112882348 hsa-miR-6731-5p 0 1 0
chr13:112882140|112882348 hsa-miR-3116 -11 1 0
chr13:112882140|112882348 hsa-miR-4722-3p -7 1 0
chr13:112882140|112882348 hsa-miR-4757-5p -8 1 0
chr13:112882140|112882348 hsa-miR-6862-3p -10 1 0
chr13:112882140|112882348 hsa-miR-4691-5p -14 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:112882140|112882348
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MTARRVGQQNVPPALSRMPRGHWCGSTTTVLGPGGQGAMLEGK
Nucleotide Sequence ATGACAGCGCGCAGGGTGGGCCAGCAGAATGTCCCTCCTGCGTTGAGCCGAATGCCCAGAGGCCACTGGTGTGGCTCAACAACCACAGTGCTGGGTCCAGGCGGCCAGGGTGCCATGCTCGAGGGCAAG
CircID chr13:112882140|112882348
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MGEWPLHDSAQGGPAECPSCVEPNAQRPLVWLNNHSAGSRRPGCHARGQG
Nucleotide Sequence CTGGGGGAATGGCCTCTGCATGACAGCGCGCAGGGTGGGCCAGCAGAATGTCCCTCCTGCGTTGAGCCGAATGCCCAGAGGCCACTGGTGTGGCTCAACAACCACAGTGCTGGGTCCAGGCGGCCAGGGTGCCATGCTCGAGGGCAAGGC
CircID chr13:112882140|112882348
ORF Type ORF3
Protein Length 68
Nucleotide Length 204
Protein Sequence MPSSMAPWPPGPSTVVVEPHQWPLGIRLNAGGTFCWPTLRAVMQRPFPQACVFTHLPSLAFAVTGREE
Nucleotide Sequence TTGCCCTCGAGCATGGCACCCTGGCCGCCTGGACCCAGCACTGTGGTTGTTGAGCCACACCAGTGGCCTCTGGGCATTCGGCTCAACGCAGGAGGGACATTCTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCCACCTGCCATCATTGGCCTTTGCTGTCACTGGGAGAGAAGAG
CircID chr13:112882140|112882348
ORF Type ORF4
Protein Length 59
Nucleotide Length 177
Protein Sequence MDPALWLLSHTSGLWAFGSTQEGHSAGPPCALSCRGHSPRPVSSPTCHHWPLLSLGEKS
Nucleotide Sequence CTGGACCCAGCACTGTGGTTGTTGAGCCACACCAGTGGCCTCTGGGCATTCGGCTCAACGCAGGAGGGACATTCTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCCACCTGCCATCATTGGCCTTTGCTGTCACTGGGAGAGAAGAGC
CircID chr13:112882140|112882348
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MLAHPARCHAEAIPPGLCLHPPAIIGLCCHWERRA
Nucleotide Sequence CTGCTGGCCCACCCTGCGCGCTGTCATGCAGAGGCCATTCCCCCAGGCCTGTGTCTTCACCCACCTGCCATCATTGGCCTTTGCTGTCACTGGGAGAGAAGAGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab