CircRNA Information

General Information
circRNA Basic Information
CircID chr13:112885702|112885891
Strand -
CircType exon
Host Gene ENSG00000068650.17;
Algorism CIRI2;
Sequence AAGTGCACACTGTCCTGGTGTCCTGCACTGCATCCTGCCTCCTTGCTGAGGGGCCCCTGTGAGAGGCCTCTGGATGGGCATGGGAAGATGGGCTCCCTGGCCCCCAGCCCATGCCTCCCTGGGATGAAGAGTCCCCCTCCTGGCAGAATGTCTGGGCTTTGCAGAGCAGGCCCCGGGGGTGAAGTCGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:112885702|112885891 hsa-miR-148a-5p 0 0 1
chr13:112885702|112885891 hsa-miR-148a-3p 0 0 1
chr13:112885702|112885891 hsa-miR-152-5p 0 0 1
chr13:112885702|112885891 hsa-miR-152-3p 0 0 1
chr13:112885702|112885891 hsa-miR-148b-5p 0 0 1
chr13:112885702|112885891 hsa-miR-148b-3p 0 0 1
chr13:112885702|112885891 hsa-miR-412-5p 0 0 1
chr13:112885702|112885891 hsa-miR-412-3p 0 0 1
chr13:112885702|112885891 hsa-miR-527 0 0 1
chr13:112885702|112885891 hsa-miR-545-5p 0 0 1
chr13:112885702|112885891 hsa-miR-545-3p 0 0 1
chr13:112885702|112885891 hsa-miR-637 1 1 1
chr13:112885702|112885891 hsa-miR-648 0 0 1
chr13:112885702|112885891 hsa-miR-650 0 1 1
chr13:112885702|112885891 hsa-miR-665 0 0 1
chr13:112885702|112885891 hsa-miR-940 0 0 1
chr13:112885702|112885891 hsa-miR-1286 0 0 1
chr13:112885702|112885891 hsa-miR-1321 0 0 1
chr13:112885702|112885891 hsa-miR-1197 0 0 1
chr13:112885702|112885891 hsa-miR-1827 0 0 1
chr13:112885702|112885891 hsa-miR-296-5p 0 1 1
chr13:112885702|112885891 hsa-miR-525-5p 0 0 1
chr13:112885702|112885891 hsa-miR-513a-5p 0 0 1
chr13:112885702|112885891 hsa-miR-520a-5p 0 0 1
chr13:112885702|112885891 hsa-miR-518a-5p 0 0 1
chr13:112885702|112885891 hsa-miR-342-3p 0 0 1
chr13:112885702|112885891 hsa-miR-220c 0 0 1
chr13:112885702|112885891 hsa-miR-762 1 1 0
chr13:112885702|112885891 hsa-miR-4270 0 1 0
chr13:112885702|112885891 hsa-miR-4436a 0 1 0
chr13:112885702|112885891 hsa-miR-4449 1 0 0
chr13:112885702|112885891 hsa-miR-4492 0 1 0
chr13:112885702|112885891 hsa-miR-4498 0 1 0
chr13:112885702|112885891 hsa-miR-1587 0 1 0
chr13:112885702|112885891 hsa-miR-4656 1 0 0
chr13:112885702|112885891 hsa-miR-4739 1 1 0
chr13:112885702|112885891 hsa-miR-5691 0 1 0
chr13:112885702|112885891 hsa-miR-5787 0 1 0
chr13:112885702|112885891 hsa-miR-12125 0 1 0
chr13:112885702|112885891 hsa-miR-4731-5p 0 1 0
chr13:112885702|112885891 hsa-miR-3194-3p 0 1 0
chr13:112885702|112885891 hsa-miR-6765-5p 1 0 0
chr13:112885702|112885891 hsa-miR-4786-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6089 1 0 0
chr13:112885702|112885891 hsa-miR-4695-5p 1 1 0
chr13:112885702|112885891 hsa-miR-4722-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6840-5p 0 1 0
chr13:112885702|112885891 hsa-miR-3622b-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6798-5p 1 0 0
chr13:112885702|112885891 hsa-miR-4640-5p 1 1 0
chr13:112885702|112885891 hsa-miR-6753-5p 0 1 0
chr13:112885702|112885891 hsa-let-7e-5p 0 1 0
chr13:112885702|112885891 hsa-miR-7113-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6515-3p 0 1 0
chr13:112885702|112885891 hsa-miR-4763-3p 1 1 0
chr13:112885702|112885891 hsa-miR-6893-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6754-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6756-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6803-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6819-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6851-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6722-3p 1 0 0
chr13:112885702|112885891 hsa-miR-6797-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6808-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6754-3p 0 1 0
chr13:112885702|112885891 hsa-miR-1915-3p 0 1 0
chr13:112885702|112885891 hsa-miR-3620-5p 0 1 0
chr13:112885702|112885891 hsa-miR-5196-5p 1 0 0
chr13:112885702|112885891 hsa-miR-6836-5p 1 0 0
chr13:112885702|112885891 hsa-miR-1909-3p 1 0 0
chr13:112885702|112885891 hsa-miR-328-5p 1 0 0
chr13:112885702|112885891 hsa-miR-4726-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6777-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6794-5p 1 1 0
chr13:112885702|112885891 hsa-miR-939-5p 1 0 0
chr13:112885702|112885891 hsa-miR-1914-3p 1 0 0
chr13:112885702|112885891 hsa-miR-3173-3p 0 1 0
chr13:112885702|112885891 hsa-miR-6891-5p 1 1 0
chr13:112885702|112885891 hsa-miR-6762-5p 1 1 0
chr13:112885702|112885891 hsa-miR-3619-5p 1 1 0
chr13:112885702|112885891 hsa-miR-6503-5p 0 1 0
chr13:112885702|112885891 hsa-miR-6820-3p 0 1 0
chr13:112885702|112885891 hsa-miR-549a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:112885702|112885891
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MSWCPALHPASLLRGPCERPLDGHGKMGSLAPSPCLPGMKSPPPGRMSGLCRAGPGGEVA
Nucleotide Sequence CTGTCCTGGTGTCCTGCACTGCATCCTGCCTCCTTGCTGAGGGGCCCCTGTGAGAGGCCTCTGGATGGGCATGGGAAGATGGGCTCCCTGGCCCCCAGCCCATGCCTCCCTGGGATGAAGAGTCCCCCTCCTGGCAGAATGTCTGGGCTTTGCAGAGCAGGCCCCGGGGGTGAAGTCGCA
CircID chr13:112885702|112885891
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence LRLHPRGLLCKAQTFCQEGDSSSQGGMGWGPGSPSSHAHPEASHRGPSARRQDAVQDTRTVCT
Nucleotide Sequence CTGCGACTTCACCCCCGGGGCCTGCTCTGCAAAGCCCAGACATTCTGCCAGGAGGGGGACTCTTCATCCCAGGGAGGCATGGGCTGGGGGCCAGGGAGCCCATCTTCCCATGCCCATCCAGAGGCCTCTCACAGGGGCCCCTCAGCAAGGAGGCAGGATGCAGTGCAGGACACCAGGACAGTGTGCACT
CircID chr13:112885702|112885891
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MPIQRPLTGAPQQGGRMQCRTPGQCAL
Nucleotide Sequence ATGCCCATCCAGAGGCCTCTCACAGGGGCCCCTCAGCAAGGAGGCAGGATGCAGTGCAGGACACCAGGACAGTGTGCACTT
CircID chr13:112885702|112885891
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MQSPDILPGGGLFIPGRHGLGAREPIFPCPSRGLSQGPLSKEAGCSAGHQDSVH
Nucleotide Sequence CTGCAAAGCCCAGACATTCTGCCAGGAGGGGGACTCTTCATCCCAGGGAGGCATGGGCTGGGGGCCAGGGAGCCCATCTTCCCATGCCCATCCAGAGGCCTCTCACAGGGGCCCCTCAGCAAGGAGGCAGGATGCAGTGCAGGACACCAGGACAGTGTGCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab