CircRNA Information

General Information
circRNA Basic Information
CircID chr13:113087782|113088628
Strand +
CircType exon
Host Gene ENSG00000126217.19;
Algorism CIRI2;
Sequence CTGGTGCTGGTCGGGGCCGGCAGGGGCAGGCTCTGTGACTGCTCCAGCGCCCGGTGCTGGCTGGCTTCTGCGAGGAGGGAGCAGACAAACCACGTGAACGAGCGTCTTTACTTCAACGCCGAGGCACCTTGCGCATGGGGGGACTGTGCGGTTGCTCTGAACATAGGTAAAAATGCACCTGGAGCGGAAGCTACGGGAAACGATCGCTTGAAGACAGCCTCACCTCTACAAGCCTGCAGCTGGCTGGTCAGCACTTTCCGAATTTCATTCACCCACGCGGCTTTAATCTCAGGAGTTGGCGCCTGGACGATGTAGACCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:113087782|113088628 hsa-miR-17-5p 0 0 1
chr13:113087782|113088628 hsa-miR-17-3p 0 0 1
chr13:113087782|113088628 hsa-miR-18a-5p 0 0 1
chr13:113087782|113088628 hsa-miR-18a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-20a-5p 0 0 1
chr13:113087782|113088628 hsa-miR-20a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-29a-5p 0 0 1
chr13:113087782|113088628 hsa-miR-29a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-93-5p 0 0 1
chr13:113087782|113088628 hsa-miR-93-3p 0 0 1
chr13:113087782|113088628 hsa-miR-106a-5p 0 0 1
chr13:113087782|113088628 hsa-miR-106a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-106b-5p 0 0 1
chr13:113087782|113088628 hsa-miR-106b-3p 0 0 1
chr13:113087782|113088628 hsa-miR-29c-5p 0 0 1
chr13:113087782|113088628 hsa-miR-29c-3p 0 0 1
chr13:113087782|113088628 hsa-miR-302a-5p 0 0 1
chr13:113087782|113088628 hsa-miR-302a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-302b-5p 0 0 1
chr13:113087782|113088628 hsa-miR-302b-3p 0 0 1
chr13:113087782|113088628 hsa-miR-302c-5p 0 0 1
chr13:113087782|113088628 hsa-miR-302c-3p 0 0 1
chr13:113087782|113088628 hsa-miR-302d-5p 0 0 1
chr13:113087782|113088628 hsa-miR-302d-3p 0 0 1
chr13:113087782|113088628 hsa-miR-372-5p 0 0 1
chr13:113087782|113088628 hsa-miR-372-3p 0 0 1
chr13:113087782|113088628 hsa-miR-373-5p 0 0 1
chr13:113087782|113088628 hsa-miR-373-3p 0 0 1
chr13:113087782|113088628 hsa-miR-346 0 0 1
chr13:113087782|113088628 hsa-miR-18b-5p 0 0 1
chr13:113087782|113088628 hsa-miR-18b-3p 0 0 1
chr13:113087782|113088628 hsa-miR-20b-5p 0 0 1
chr13:113087782|113088628 hsa-miR-20b-3p 0 0 1
chr13:113087782|113088628 hsa-miR-498-5p 0 0 1
chr13:113087782|113088628 hsa-miR-498-3p 0 0 1
chr13:113087782|113088628 hsa-miR-520e-5p 0 0 1
chr13:113087782|113088628 hsa-miR-520e-3p 0 0 1
chr13:113087782|113088628 hsa-miR-520b-5p 0 0 1
chr13:113087782|113088628 hsa-miR-520b-3p 0 0 1
chr13:113087782|113088628 hsa-miR-519d-5p 0 0 1
chr13:113087782|113088628 hsa-miR-519d-3p 0 0 1
chr13:113087782|113088628 hsa-miR-572 0 0 1
chr13:113087782|113088628 hsa-miR-573 0 0 1
chr13:113087782|113088628 hsa-miR-596 0 1 1
chr13:113087782|113088628 hsa-miR-626 0 0 1
chr13:113087782|113088628 hsa-miR-632 0 1 1
chr13:113087782|113088628 hsa-miR-634 0 1 1
chr13:113087782|113088628 hsa-miR-298 0 1 1
chr13:113087782|113088628 hsa-miR-1231 0 0 1
chr13:113087782|113088628 hsa-miR-1200 0 1 1
chr13:113087782|113088628 hsa-miR-1205 0 0 1
chr13:113087782|113088628 hsa-miR-1257 0 0 1
chr13:113087782|113088628 hsa-miR-1262 0 1 1
chr13:113087782|113088628 hsa-miR-302e 0 0 1
chr13:113087782|113088628 hsa-miR-1307-5p 0 0 1
chr13:113087782|113088628 hsa-miR-1307-3p 0 0 1
chr13:113087782|113088628 hsa-miR-512-3p 0 1 1
chr13:113087782|113088628 hsa-miR-485-5p 0 0 1
chr13:113087782|113088628 hsa-miR-767-3p 0 0 1
chr13:113087782|113088628 hsa-miR-628-5p 0 0 1
chr13:113087782|113088628 hsa-miR-324-3p 0 0 1
chr13:113087782|113088628 hsa-miR-520d-3p 0 0 1
chr13:113087782|113088628 hsa-miR-520a-3p 0 0 1
chr13:113087782|113088628 hsa-miR-520c-3p 0 0 1
chr13:113087782|113088628 hsa-miR-29b 0 0 1
chr13:113087782|113088628 hsa-miR-764 1 0 0
chr13:113087782|113088628 hsa-miR-1183 1 0 0
chr13:113087782|113088628 hsa-miR-1202 1 1 0
chr13:113087782|113088628 hsa-miR-1291 0 1 0
chr13:113087782|113088628 hsa-miR-1295a 1 0 0
chr13:113087782|113088628 hsa-miR-1471 1 0 0
chr13:113087782|113088628 hsa-miR-1913 0 1 0
chr13:113087782|113088628 hsa-miR-4257 1 0 0
chr13:113087782|113088628 hsa-miR-3135b 0 1 0
chr13:113087782|113088628 hsa-miR-4741 1 0 0
chr13:113087782|113088628 hsa-miR-4767 1 0 0
chr13:113087782|113088628 hsa-miR-5087 0 1 0
chr13:113087782|113088628 hsa-miR-6081 1 1 0
chr13:113087782|113088628 hsa-miR-9718 0 1 0
chr13:113087782|113088628 hsa-miR-671-5p 1 0 0
chr13:113087782|113088628 hsa-miR-210-5p 0 1 0
chr13:113087782|113088628 hsa-miR-6804-5p 1 0 0
chr13:113087782|113088628 hsa-let-7i-3p 0 1 0
chr13:113087782|113088628 hsa-miR-423-3p 1 0 0
chr13:113087782|113088628 hsa-miR-6748-5p 1 1 0
chr13:113087782|113088628 hsa-miR-185-3p 1 0 0
chr13:113087782|113088628 hsa-miR-6782-5p 1 0 0
chr13:113087782|113088628 hsa-miR-3194-5p 0 1 0
chr13:113087782|113088628 hsa-miR-6821-5p 1 0 0
chr13:113087782|113088628 hsa-miR-6858-3p 0 1 0
chr13:113087782|113088628 hsa-miR-6853-5p 0 1 0
chr13:113087782|113088628 hsa-miR-4763-5p 0 1 0
chr13:113087782|113088628 hsa-miR-3944-3p 1 0 0
chr13:113087782|113088628 hsa-miR-4786-3p 0 1 0
chr13:113087782|113088628 hsa-miR-3065-3p 0 1 0
chr13:113087782|113088628 hsa-miR-6499-5p 0 1 0
chr13:113087782|113088628 hsa-miR-6828-3p 0 1 0
chr13:113087782|113088628 hsa-miR-6869-3p 1 0 0
chr13:113087782|113088628 hsa-miR-6501-3p 0 1 0
chr13:113087782|113088628 hsa-miR-181d-3p 0 1 0
chr13:113087782|113088628 hsa-miR-6769b-5p 1 0 0
chr13:113087782|113088628 hsa-miR-4758-5p 1 0 0
chr13:113087782|113088628 hsa-miR-6511b-5p 1 1 0
chr13:113087782|113088628 hsa-miR-3085-5p 1 0 0
chr13:113087782|113088628 hsa-miR-10392-3p 0 1 0
chr13:113087782|113088628 hsa-miR-6884-5p 1 0 0
chr13:113087782|113088628 hsa-miR-10394-5p 0 1 0
chr13:113087782|113088628 hsa-miR-4691-5p 1 0 0
chr13:113087782|113088628 hsa-miR-33b-3p 0 1 0
chr13:113087782|113088628 hsa-miR-4704-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:113087782|113088628
ORF Type ORF1
Protein Length 104
Nucleotide Length 315
Protein Sequence LVLVGAGRGRLCDCSSARCWLASARREQTNHVNERLYFNAEAPCAWGDCAVALNIGKNAPGAEATGNDRLKTASPLQACSWLVSTFRISFTHAALISGVGAWTM
Nucleotide Sequence CTGGTGCTGGTCGGGGCCGGCAGGGGCAGGCTCTGTGACTGCTCCAGCGCCCGGTGCTGGCTGGCTTCTGCGAGGAGGGAGCAGACAAACCACGTGAACGAGCGTCTTTACTTCAACGCCGAGGCACCTTGCGCATGGGGGGACTGTGCGGTTGCTCTGAACATAGGTAAAAATGCACCTGGAGCGGAAGCTACGGGAAACGATCGCTTGAAGACAGCCTCACCTCTACAAGCCTGCAGCTGGCTGGTCAGCACTTTCCGAATTTCATTCACCCACGCGGCTTTAATCTCAGGAGTTGGCGCCTGGACGATGTAG
CircID chr13:113087782|113088628
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MLQRPVLAGFCEEGADKPRERASLLQRRGTLRMGGLCGCSEHR
Nucleotide Sequence CTGCTCCAGCGCCCGGTGCTGGCTGGCTTCTGCGAGGAGGGAGCAGACAAACCACGTGAACGAGCGTCTTTACTTCAACGCCGAGGCACCTTGCGCATGGGGGGACTGTGCGGTTGCTCTGAACATAGGTAA
CircID chr13:113087782|113088628
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MQLAGQHFPNFIHPRGFNLRSWRLDDVDL
Nucleotide Sequence CTGCAGCTGGCTGGTCAGCACTTTCCGAATTTCATTCACCCACGCGGCTTTAATCTCAGGAGTTGGCGCCTGGACGATGTAGACCTC
CircID chr13:113087782|113088628
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MTSQLQACRGEAVFKRSFPVASAPGAFLPMFRATAQSPHAQGASALK
Nucleotide Sequence CTGACCAGCCAGCTGCAGGCTTGTAGAGGTGAGGCTGTCTTCAAGCGATCGTTTCCCGTAGCTTCCGCTCCAGGTGCATTTTTACCTATGTTCAGAGCAACCGCACAGTCCCCCCATGCGCAAGGTGCCTCGGCGTTGAAGTAA
CircID chr13:113087782|113088628
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MSAPSSQKPASTGRWSSHRACPCRPRPAP
Nucleotide Sequence TTGTCTGCTCCCTCCTCGCAGAAGCCAGCCAGCACCGGGCGCTGGAGCAGTCACAGAGCCTGCCCCTGCCGGCCCCGACCAGCACCA
CircID chr13:113087782|113088628
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MLPPRRSQPAPGAGAVTEPAPAGPDQHQ
Nucleotide Sequence CTGCTCCCTCCTCGCAGAAGCCAGCCAGCACCGGGCGCTGGAGCAGTCACAGAGCCTGCCCCTGCCGGCCCCGACCAGCACCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab