CircRNA Information

General Information
circRNA Basic Information
CircID chr13:113323050|113323152
Strand -
CircType exon
Host Gene ENSG00000185896.10;
Algorism CIRI2;
Sequence AGTAGAGAGGGAACATCCTAAGACAGAGGAACTCCAGAGATGAGTGTCTGGAGCGCTTCAGTTCAGCTTTAAAGGCCAGGACGGGCCACACGTGGCTGGCGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:113323050|113323152 hsa-miR-320a-5p 0 0 1
chr13:113323050|113323152 hsa-miR-320a-3p 0 0 1
chr13:113323050|113323152 hsa-miR-326 0 0 1
chr13:113323050|113323152 hsa-miR-518e-5p 0 0 1
chr13:113323050|113323152 hsa-miR-518e-3p 0 0 1
chr13:113323050|113323152 hsa-miR-651-5p 0 0 1
chr13:113323050|113323152 hsa-miR-651-3p 0 0 1
chr13:113323050|113323152 hsa-miR-663b 0 1 1
chr13:113323050|113323152 hsa-miR-1247-5p 0 0 1
chr13:113323050|113323152 hsa-miR-1247-3p 0 0 1
chr13:113323050|113323152 hsa-miR-1265 0 0 1
chr13:113323050|113323152 hsa-miR-320b 0 1 1
chr13:113323050|113323152 hsa-miR-320c 0 1 1
chr13:113323050|113323152 hsa-miR-330-5p 0 1 1
chr13:113323050|113323152 hsa-miR-320d 0 1 1
chr13:113323050|113323152 hsa-miR-642 0 0 1
chr13:113323050|113323152 hsa-miR-644 0 0 1
chr13:113323050|113323152 hsa-miR-516b 0 0 1
chr13:113323050|113323152 hsa-miR-644a 0 1 0
chr13:113323050|113323152 hsa-miR-4326 0 1 0
chr13:113323050|113323152 hsa-miR-4429 0 1 0
chr13:113323050|113323152 hsa-miR-4478 0 1 0
chr13:113323050|113323152 hsa-miR-4539 0 1 0
chr13:113323050|113323152 hsa-miR-3194-5p 0 1 0
chr13:113323050|113323152 hsa-miR-642b-5p 0 1 0
chr13:113323050|113323152 hsa-miR-6888-3p 0 1 0
chr13:113323050|113323152 hsa-miR-3059-5p 0 1 0
chr13:113323050|113323152 hsa-miR-6876-3p 0 1 0
chr13:113323050|113323152 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:113323050|113323152
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MAFKAELKRSRHSSLEFLCLRMFPLY
Nucleotide Sequence CTGGCCTTTAAAGCTGAACTGAAGCGCTCCAGACACTCATCTCTGGAGTTCCTCTGTCTTAGGATGTTCCCTCTCTAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab