CircRNA Information

General Information
circRNA Basic Information
CircID chr13:113820801|113820953
Strand +
CircType exon
Host Gene ENSG00000183087.13;
Algorism CIRI2;
Sequence CGGAGGCTGCTGGACCTGGACGAGGCGGCGTACAAGCACAGCGACATCACGGCCCACTCCTGCCCCCCCGTGGAGCCCGCCGCAGCCTAGGCCCCCACGGGACGCGGCAGGCTTCTCAGTCTCTGTCCGAGACAGCCGGGAGGAGCCTGGGGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:113820801|113820953 hsa-miR-484 0 0 1
chr13:113820801|113820953 hsa-miR-596 0 1 1
chr13:113820801|113820953 hsa-miR-604 0 0 1
chr13:113820801|113820953 hsa-miR-626 0 0 1
chr13:113820801|113820953 hsa-miR-636 1 1 1
chr13:113820801|113820953 hsa-miR-645 0 0 1
chr13:113820801|113820953 hsa-miR-1253 0 0 1
chr13:113820801|113820953 hsa-miR-486-3p 0 0 1
chr13:113820801|113820953 hsa-miR-361-3p 0 1 1
chr13:113820801|113820953 hsa-miR-338-3p 0 0 1
chr13:113820801|113820953 hsa-miR-1300 0 0 1
chr13:113820801|113820953 hsa-miR-218 0 0 1
chr13:113820801|113820953 hsa-miR-184 0 1 0
chr13:113820801|113820953 hsa-miR-608 1 0 0
chr13:113820801|113820953 hsa-miR-637 1 0 0
chr13:113820801|113820953 hsa-miR-643 1 0 0
chr13:113820801|113820953 hsa-miR-663a 1 0 0
chr13:113820801|113820953 hsa-miR-762 1 0 0
chr13:113820801|113820953 hsa-miR-1538 1 0 0
chr13:113820801|113820953 hsa-miR-2861 1 0 0
chr13:113820801|113820953 hsa-miR-3135a 0 1 0
chr13:113820801|113820953 hsa-miR-3196 1 0 0
chr13:113820801|113820953 hsa-miR-4279 0 1 0
chr13:113820801|113820953 hsa-miR-3917 0 1 0
chr13:113820801|113820953 hsa-miR-4481 1 1 0
chr13:113820801|113820953 hsa-miR-4488 1 0 0
chr13:113820801|113820953 hsa-miR-4492 1 0 0
chr13:113820801|113820953 hsa-miR-4499 0 1 0
chr13:113820801|113820953 hsa-miR-4651 1 0 0
chr13:113820801|113820953 hsa-miR-4675 1 0 0
chr13:113820801|113820953 hsa-miR-4688 1 0 0
chr13:113820801|113820953 hsa-miR-4706 1 0 0
chr13:113820801|113820953 hsa-miR-4741 1 0 0
chr13:113820801|113820953 hsa-miR-4785 1 0 0
chr13:113820801|113820953 hsa-miR-5090 1 0 0
chr13:113820801|113820953 hsa-miR-5091 0 1 0
chr13:113820801|113820953 hsa-miR-7974 1 1 0
chr13:113820801|113820953 hsa-miR-8072 1 0 0
chr13:113820801|113820953 hsa-miR-11400 1 0 0
chr13:113820801|113820953 hsa-miR-4433b-3p 1 1 0
chr13:113820801|113820953 hsa-miR-6749-3p 0 1 0
chr13:113820801|113820953 hsa-miR-128-1-5p 1 0 0
chr13:113820801|113820953 hsa-miR-4726-3p 0 1 0
chr13:113820801|113820953 hsa-miR-4433a-3p 1 1 0
chr13:113820801|113820953 hsa-miR-4722-5p 1 1 0
chr13:113820801|113820953 hsa-miR-6772-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6786-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6835-5p 1 0 0
chr13:113820801|113820953 hsa-miR-7109-5p 1 0 0
chr13:113820801|113820953 hsa-miR-3944-3p 1 0 0
chr13:113820801|113820953 hsa-miR-1229-5p 1 0 0
chr13:113820801|113820953 hsa-miR-5001-3p 1 1 0
chr13:113820801|113820953 hsa-miR-1228-5p 1 0 0
chr13:113820801|113820953 hsa-miR-149-3p 1 0 0
chr13:113820801|113820953 hsa-miR-6781-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6877-5p 1 0 0
chr13:113820801|113820953 hsa-miR-654-5p 1 0 0
chr13:113820801|113820953 hsa-miR-4638-5p 0 1 0
chr13:113820801|113820953 hsa-miR-873-3p 0 1 0
chr13:113820801|113820953 hsa-miR-10400-5p 1 0 0
chr13:113820801|113820953 hsa-miR-4763-3p 1 0 0
chr13:113820801|113820953 hsa-miR-6787-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6816-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6743-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6752-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6756-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6769a-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6803-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6722-3p 1 0 0
chr13:113820801|113820953 hsa-miR-6751-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6879-5p 1 0 0
chr13:113820801|113820953 hsa-miR-7111-5p 1 0 0
chr13:113820801|113820953 hsa-miR-3620-5p 1 1 0
chr13:113820801|113820953 hsa-miR-10396b-5p 1 0 0
chr13:113820801|113820953 hsa-miR-1237-5p 1 0 0
chr13:113820801|113820953 hsa-miR-328-5p 1 1 0
chr13:113820801|113820953 hsa-miR-6795-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6846-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6848-5p 1 1 0
chr13:113820801|113820953 hsa-miR-6887-5p 1 0 0
chr13:113820801|113820953 hsa-miR-4436b-3p 1 0 0
chr13:113820801|113820953 hsa-miR-4697-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6885-5p 1 0 0
chr13:113820801|113820953 hsa-miR-4758-5p 1 0 0
chr13:113820801|113820953 hsa-miR-3940-5p 0 1 0
chr13:113820801|113820953 hsa-miR-5008-3p 0 1 0
chr13:113820801|113820953 hsa-miR-6785-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6724-5p 1 0 0
chr13:113820801|113820953 hsa-miR-6791-5p 1 0 0
chr13:113820801|113820953 hsa-miR-10400-3p 1 0 0
chr13:113820801|113820953 hsa-miR-6884-5p 0 1 0
chr13:113820801|113820953 hsa-miR-6737-3p 0 1 0
chr13:113820801|113820953 hsa-miR-10399-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:113820801|113820953
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MLDLDEAAYKHSDITAHSCPPVEPAAA
Nucleotide Sequence CTGCTGGACCTGGACGAGGCGGCGTACAAGCACAGCGACATCACGGCCCACTCCTGCCCCCCCGTGGAGCCCGCCGCAGCCTAG
CircID chr13:113820801|113820953
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MPPRGARRSLGPHGTRQASQSLSETAGRSLG
Nucleotide Sequence CTGCCCCCCCGTGGAGCCCGCCGCAGCCTAGGCCCCCACGGGACGCGGCAGGCTTCTCAGTCTCTGTCCGAGACAGCCGGGAGGAGCCTGGGG
CircID chr13:113820801|113820953
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MSRTETEKPAASRGGLGCGGLHGGAGVGRDVAVLVRRLVQVQQPP
Nucleotide Sequence CTGTCTCGGACAGAGACTGAGAAGCCTGCCGCGTCCCGTGGGGGCCTAGGCTGCGGCGGGCTCCACGGGGGGGCAGGAGTGGGCCGTGATGTCGCTGTGCTTGTACGCCGCCTCGTCCAGGTCCAGCAGCCTCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab