CircRNA Information

General Information
circRNA Basic Information
CircID chr13:113821624|113821844
Strand -
CircType exon
Host Gene ENSG00000183087.13;
Algorism CIRI2;
Sequence TGCAGCCTGGCCCGAGGTCTGCCCAGCCCTCTCCCCCGGGGCTGGTCTGATGGGTGTGGACGAATGCTCCCTGAAGATGCAGGTTCGTGGGGCCTGACTCAGGCCAATGCCGGCCCCCGTACGTGTTTCTCAGTCTCAGCCAATGACCTGACCAGCACCGAGACACCATAATAGCCACTAACGACCCACCTGGACTTCTCCTTCCTCTTAAAACACAAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:113821624|113821844 hsa-miR-539-5p 0 0 1
chr13:113821624|113821844 hsa-miR-539-3p 0 0 1
chr13:113821624|113821844 hsa-miR-581 0 0 1
chr13:113821624|113821844 hsa-miR-584-5p 0 0 1
chr13:113821624|113821844 hsa-miR-584-3p 0 0 1
chr13:113821624|113821844 hsa-miR-612 0 0 1
chr13:113821624|113821844 hsa-miR-616-5p 0 0 1
chr13:113821624|113821844 hsa-miR-616-3p 0 0 1
chr13:113821624|113821844 hsa-miR-647 0 0 1
chr13:113821624|113821844 hsa-miR-1179 0 0 1
chr13:113821624|113821844 hsa-miR-1250-5p 0 0 1
chr13:113821624|113821844 hsa-miR-1250-3p 0 0 1
chr13:113821624|113821844 hsa-miR-1256 0 0 1
chr13:113821624|113821844 hsa-miR-886-5p 0 0 1
chr13:113821624|113821844 hsa-miR-138 0 0 1
chr13:113821624|113821844 hsa-miR-1285 0 0 1
chr13:113821624|113821844 hsa-miR-637 1 0 0
chr13:113821624|113821844 hsa-miR-658 1 0 0
chr13:113821624|113821844 hsa-miR-762 1 0 0
chr13:113821624|113821844 hsa-miR-765 1 0 0
chr13:113821624|113821844 hsa-miR-4259 1 0 0
chr13:113821624|113821844 hsa-miR-4270 1 0 0
chr13:113821624|113821844 hsa-miR-4271 1 0 0
chr13:113821624|113821844 hsa-miR-3621 1 0 0
chr13:113821624|113821844 hsa-miR-3907 1 0 0
chr13:113821624|113821844 hsa-miR-3916 1 0 0
chr13:113821624|113821844 hsa-miR-3937 1 0 0
chr13:113821624|113821844 hsa-miR-4476 1 0 0
chr13:113821624|113821844 hsa-miR-4507 1 0 0
chr13:113821624|113821844 hsa-miR-4516 1 0 0
chr13:113821624|113821844 hsa-miR-4533 1 0 0
chr13:113821624|113821844 hsa-miR-4534 1 0 0
chr13:113821624|113821844 hsa-miR-1587 1 0 0
chr13:113821624|113821844 hsa-miR-4651 1 0 0
chr13:113821624|113821844 hsa-miR-4656 1 0 0
chr13:113821624|113821844 hsa-miR-4688 1 0 0
chr13:113821624|113821844 hsa-miR-4689 1 0 0
chr13:113821624|113821844 hsa-miR-4739 1 0 0
chr13:113821624|113821844 hsa-miR-5703 1 0 0
chr13:113821624|113821844 hsa-miR-5787 1 0 0
chr13:113821624|113821844 hsa-miR-6090 1 0 0
chr13:113821624|113821844 hsa-miR-6127 1 0 0
chr13:113821624|113821844 hsa-miR-6131 1 0 0
chr13:113821624|113821844 hsa-miR-6133 1 0 0
chr13:113821624|113821844 hsa-miR-6860 1 0 0
chr13:113821624|113821844 hsa-miR-11399 1 0 0
chr13:113821624|113821844 hsa-miR-12114 1 0 0
chr13:113821624|113821844 hsa-miR-12118 1 0 0
chr13:113821624|113821844 hsa-miR-4433b-3p 1 0 0
chr13:113821624|113821844 hsa-miR-92a-2-5p 1 0 0
chr13:113821624|113821844 hsa-miR-128-1-5p 1 0 0
chr13:113821624|113821844 hsa-miR-504-3p 1 0 0
chr13:113821624|113821844 hsa-miR-671-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3150a-3p 1 0 0
chr13:113821624|113821844 hsa-miR-7106-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6894-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4687-3p 1 0 0
chr13:113821624|113821844 hsa-miR-3692-5p 1 0 0
chr13:113821624|113821844 hsa-miR-766-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6746-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3064-5p 1 0 0
chr13:113821624|113821844 hsa-miR-7154-3p 1 0 0
chr13:113821624|113821844 hsa-miR-6741-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6748-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6793-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3190-3p 1 0 0
chr13:113821624|113821844 hsa-miR-6798-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6760-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3150b-3p 1 0 0
chr13:113821624|113821844 hsa-miR-7109-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4787-5p 1 0 0
chr13:113821624|113821844 hsa-miR-193a-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6824-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3162-5p 1 0 0
chr13:113821624|113821844 hsa-miR-887-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4746-5p 1 0 0
chr13:113821624|113821844 hsa-miR-1233-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4763-3p 1 0 0
chr13:113821624|113821844 hsa-miR-6769b-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6778-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6870-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6775-5p 1 0 0
chr13:113821624|113821844 hsa-miR-1343-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6743-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6756-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6769a-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6803-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6813-5p 1 0 0
chr13:113821624|113821844 hsa-miR-11181-3p 1 0 0
chr13:113821624|113821844 hsa-miR-1249-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6779-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6797-5p 1 0 0
chr13:113821624|113821844 hsa-miR-7111-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3620-5p 1 0 0
chr13:113821624|113821844 hsa-miR-5196-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6780b-5p 1 0 0
chr13:113821624|113821844 hsa-miR-328-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4649-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4725-3p 1 0 0
chr13:113821624|113821844 hsa-miR-6777-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6846-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6848-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6858-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6883-5p 1 0 0
chr13:113821624|113821844 hsa-miR-3187-5p 1 0 0
chr13:113821624|113821844 hsa-miR-939-5p 1 0 0
chr13:113821624|113821844 hsa-miR-10396a-3p 1 0 0
chr13:113821624|113821844 hsa-miR-3940-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6856-5p 1 0 0
chr13:113821624|113821844 hsa-miR-4747-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6876-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6891-5p 1 0 0
chr13:113821624|113821844 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr13:113821624|113821844
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MARGLPSPLPRGWSDGCGRMLPEDAGSWGLTQANAGPRTCFSVSANDLTSTETP
Nucleotide Sequence CTGGCCCGAGGTCTGCCCAGCCCTCTCCCCCGGGGCTGGTCTGATGGGTGTGGACGAATGCTCCCTGAAGATGCAGGTTCGTGGGGCCTGACTCAGGCCAATGCCGGCCCCCGTACGTGTTTCTCAGTCTCAGCCAATGACCTGACCAGCACCGAGACACCATAA
CircID chr13:113821624|113821844
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MCFKRKEKSRWVVSGYYGVSVLVRSLAETEKHVRGPALA
Nucleotide Sequence TTGTGTTTTAAGAGGAAGGAGAAGTCCAGGTGGGTCGTTAGTGGCTATTATGGTGTCTCGGTGCTGGTCAGGTCATTGGCTGAGACTGAGAAACACGTACGGGGGCCGGCATTGGCCTGA
CircID chr13:113821624|113821844
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MVSRCWSGHWLRLRNTYGGRHWPESGPTNLHLQGAFVHTHQTSPGGEGWADLGPGC
Nucleotide Sequence ATGGTGTCTCGGTGCTGGTCAGGTCATTGGCTGAGACTGAGAAACACGTACGGGGGCCGGCATTGGCCTGAGTCAGGCCCCACGAACCTGCATCTTCAGGGAGCATTCGTCCACACCCATCAGACCAGCCCCGGGGGAGAGGGCTGGGCAGACCTCGGGCCAGGCTGC
CircID chr13:113821624|113821844
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MSQAPRTCIFREHSSTPIRPAPGERAGQTSGQAA
Nucleotide Sequence CTGAGTCAGGCCCCACGAACCTGCATCTTCAGGGAGCATTCGTCCACACCCATCAGACCAGCCCCGGGGGAGAGGGCTGGGCAGACCTCGGGCCAGGCTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab