CircRNA Information

General Information
circRNA Basic Information
CircID chr13:113832462|113832675
Strand +
CircType exon
Host Gene ENSG00000183087.13;
Algorism CIRI2;
Sequence CCCCGTGATCCGACTGCGCTTCAAGAGGCTGCAGCCCACCAGGTGAGGAGGTGTCCACAGGAGGCAACACAACTTAGAATGGCCAAGACACTGGCTTCACAGGGCCCGGGCCAGGGTTCGGCCAGCAGGGAGGGGCCGGGCATCTGCCTGTGCCCAGTGCTGACTCATTTCTCCTGTGGGTGCCCAGGCTGGTAGCTGAGTTTGACTTCCGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:113832462|113832675 hsa-miR-370-5p 0 0 1
chr13:113832462|113832675 hsa-miR-370-3p 0 0 1
chr13:113832462|113832675 hsa-miR-382-5p 0 0 1
chr13:113832462|113832675 hsa-miR-382-3p 0 0 1
chr13:113832462|113832675 hsa-miR-431-5p 0 0 1
chr13:113832462|113832675 hsa-miR-431-3p 0 0 1
chr13:113832462|113832675 hsa-miR-539-5p 0 0 1
chr13:113832462|113832675 hsa-miR-539-3p 0 0 1
chr13:113832462|113832675 hsa-miR-575 0 0 1
chr13:113832462|113832675 hsa-miR-588 0 0 1
chr13:113832462|113832675 hsa-miR-612 0 1 1
chr13:113832462|113832675 hsa-miR-634 0 0 1
chr13:113832462|113832675 hsa-miR-661 0 0 1
chr13:113832462|113832675 hsa-miR-541-5p 0 0 1
chr13:113832462|113832675 hsa-miR-541-3p 0 0 1
chr13:113832462|113832675 hsa-miR-1291 0 1 1
chr13:113832462|113832675 hsa-miR-127-5p 0 0 1
chr13:113832462|113832675 hsa-miR-512-5p 0 1 1
chr13:113832462|113832675 hsa-miR-127-3p 0 0 1
chr13:113832462|113832675 hsa-miR-146b-3p 0 1 1
chr13:113832462|113832675 hsa-miR-199a-5p 0 0 1
chr13:113832462|113832675 hsa-miR-1184 0 1 1
chr13:113832462|113832675 hsa-miR-654-5p 0 1 1
chr13:113832462|113832675 hsa-miR-199b-5p 0 1 1
chr13:113832462|113832675 hsa-miR-1285 0 0 1
chr13:113832462|113832675 hsa-miR-762 1 0 0
chr13:113832462|113832675 hsa-miR-940 0 1 0
chr13:113832462|113832675 hsa-miR-1538 1 1 0
chr13:113832462|113832675 hsa-miR-1913 1 0 0
chr13:113832462|113832675 hsa-miR-3137 1 0 0
chr13:113832462|113832675 hsa-miR-3197 1 0 0
chr13:113832462|113832675 hsa-miR-4292 1 0 0
chr13:113832462|113832675 hsa-miR-4741 1 0 0
chr13:113832462|113832675 hsa-miR-5193 0 1 0
chr13:113832462|113832675 hsa-miR-5690 0 1 0
chr13:113832462|113832675 hsa-miR-5702 0 1 0
chr13:113832462|113832675 hsa-miR-6860 0 1 0
chr13:113832462|113832675 hsa-miR-8089 1 0 0
chr13:113832462|113832675 hsa-miR-134-3p 1 1 0
chr13:113832462|113832675 hsa-miR-6749-3p 1 0 0
chr13:113832462|113832675 hsa-miR-4747-3p 1 0 0
chr13:113832462|113832675 hsa-miR-593-5p 1 0 0
chr13:113832462|113832675 hsa-miR-874-3p 1 0 0
chr13:113832462|113832675 hsa-miR-6849-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6787-3p 0 1 0
chr13:113832462|113832675 hsa-miR-1915-5p 1 0 0
chr13:113832462|113832675 hsa-miR-6768-5p 0 1 0
chr13:113832462|113832675 hsa-miR-6765-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6715b-3p 1 0 0
chr13:113832462|113832675 hsa-miR-939-3p 0 1 0
chr13:113832462|113832675 hsa-miR-1226-5p 1 0 0
chr13:113832462|113832675 hsa-miR-4786-3p 0 1 0
chr13:113832462|113832675 hsa-miR-7113-3p 0 1 0
chr13:113832462|113832675 hsa-miR-4638-3p 1 0 0
chr13:113832462|113832675 hsa-miR-937-5p 0 1 0
chr13:113832462|113832675 hsa-miR-7156-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6886-5p 1 1 0
chr13:113832462|113832675 hsa-miR-6769a-3p 0 1 0
chr13:113832462|113832675 hsa-miR-660-3p 0 1 0
chr13:113832462|113832675 hsa-miR-4749-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6732-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6733-3p 0 1 0
chr13:113832462|113832675 hsa-miR-4423-5p 0 1 0
chr13:113832462|113832675 hsa-miR-5001-5p 1 0 0
chr13:113832462|113832675 hsa-miR-7107-5p 1 0 0
chr13:113832462|113832675 hsa-miR-5189-5p 1 1 0
chr13:113832462|113832675 hsa-miR-3187-5p 0 1 0
chr13:113832462|113832675 hsa-miR-10394-3p 1 0 0
chr13:113832462|113832675 hsa-miR-6511a-5p 0 1 0
chr13:113832462|113832675 hsa-miR-1285-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6791-3p 0 1 0
chr13:113832462|113832675 hsa-miR-2682-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6893-3p 0 1 0
chr13:113832462|113832675 hsa-miR-6829-3p 0 1 0
chr13:113832462|113832675 hsa-miR-10400-3p 1 0 0
chr13:113832462|113832675 hsa-miR-9851-3p 1 0 0
chr13:113832462|113832675 hsa-miR-10392-3p 0 1 0
chr13:113832462|113832675 hsa-miR-504-5p 0 1 0
chr13:113832462|113832675 hsa-miR-1234-3p 0 1 0
chr13:113832462|113832675 hsa-miR-412-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:113832462|113832675
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MAKTLASQGPGQGSASREGPGICLCPVLTHFSCGCPGW
Nucleotide Sequence ATGGCCAAGACACTGGCTTCACAGGGCCCGGGCCAGGGTTCGGCCAGCAGGGAGGGGCCGGGCATCTGCCTGTGCCCAGTGCTGACTCATTTCTCCTGTGGGTGCCCAGGCTGGTAG
CircID chr13:113832462|113832675
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MGTHRRNESALGTGRCPAPPCWPNPGPGPVKPVSWPF
Nucleotide Sequence CTGGGCACCCACAGGAGAAATGAGTCAGCACTGGGCACAGGCAGATGCCCGGCCCCTCCCTGCTGGCCGAACCCTGGCCCGGGCCCTGTGAAGCCAGTGTCTTGGCCATTCTAA
CircID chr13:113832462|113832675
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MPGPSLLAEPWPGPCEASVLAILSCVASCGHLLTWWAAAS
Nucleotide Sequence ATGCCCGGCCCCTCCCTGCTGGCCGAACCCTGGCCCGGGCCCTGTGAAGCCAGTGTCTTGGCCATTCTAAGTTGTGTTGCCTCCTGTGGACACCTCCTCACCTGGTGGGCTGCAGCCTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab