CircRNA Information

General Information
circRNA Basic Information
CircID chr13:21140637|21140947
Strand +
CircType exon
Host Gene ENSG00000150459.11;
Algorism CIRI2;
Sequence TCGTCCATTCGGTGGTGGCGGCCGTTATTGGTGGTGAAGACCCGTAGCAACAGTGGGCATGTCTGAGGGAGAGAGAAAACGGAAGGGCAGAAGTTAAAAACACCAGCTGCGAACCCGGAGCTCATCTCTCTTCCCGAGGCGTTGCGGCCTCCGAGCCTCCCCGAGACCAAAAACACCATCTCCTCCAGCACACAGGCCGCGCCTCTGCACCCTGCGGGACTCATCCCCAACCTCTTCCCGGACCCCAAAGCGGAGGGGGCCTTCACCTTCTCGCGGTCGATCGGTTTCTCTGGCTCCTTCTTAATTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:21140637|21140947 hsa-miR-197-5p 0 0 1
chr13:21140637|21140947 hsa-miR-197-3p 0 0 1
chr13:21140637|21140947 hsa-miR-143-5p 0 0 1
chr13:21140637|21140947 hsa-miR-143-3p 0 0 1
chr13:21140637|21140947 hsa-miR-133b 0 0 1
chr13:21140637|21140947 hsa-miR-412-5p 0 0 1
chr13:21140637|21140947 hsa-miR-412-3p 0 0 1
chr13:21140637|21140947 hsa-miR-614 0 0 1
chr13:21140637|21140947 hsa-miR-765 1 0 1
chr13:21140637|21140947 hsa-miR-938 0 0 1
chr13:21140637|21140947 hsa-miR-1234-3p 0 0 1
chr13:21140637|21140947 hsa-miR-1208 0 0 1
chr13:21140637|21140947 hsa-miR-1287-5p 0 0 1
chr13:21140637|21140947 hsa-miR-1287-3p 0 0 1
chr13:21140637|21140947 hsa-miR-1255a 0 0 1
chr13:21140637|21140947 hsa-miR-1324 0 0 1
chr13:21140637|21140947 hsa-miR-1234 0 0 1
chr13:21140637|21140947 hsa-miR-615-5p 1 0 1
chr13:21140637|21140947 hsa-miR-542-5p 0 0 1
chr13:21140637|21140947 hsa-miR-193a-5p 0 0 1
chr13:21140637|21140947 hsa-miR-1207-3p 0 0 1
chr13:21140637|21140947 hsa-miR-556-5p 0 0 1
chr13:21140637|21140947 hsa-miR-324-3p 0 0 1
chr13:21140637|21140947 hsa-miR-337-5p 0 0 1
chr13:21140637|21140947 hsa-miR-369-5p 0 0 1
chr13:21140637|21140947 hsa-miR-220b 0 0 1
chr13:21140637|21140947 hsa-miR-1255b 0 0 1
chr13:21140637|21140947 hsa-miR-138 0 0 1
chr13:21140637|21140947 hsa-miR-133a 0 0 1
chr13:21140637|21140947 hsa-miR-601 1 0 0
chr13:21140637|21140947 hsa-miR-638 1 0 0
chr13:21140637|21140947 hsa-miR-762 1 0 0
chr13:21140637|21140947 hsa-miR-760 1 0 0
chr13:21140637|21140947 hsa-miR-663b 1 0 0
chr13:21140637|21140947 hsa-miR-1275 1 0 0
chr13:21140637|21140947 hsa-miR-3166 0 1 0
chr13:21140637|21140947 hsa-miR-1260b 1 0 0
chr13:21140637|21140947 hsa-miR-3185 1 0 0
chr13:21140637|21140947 hsa-miR-4260 1 0 0
chr13:21140637|21140947 hsa-miR-4281 1 0 0
chr13:21140637|21140947 hsa-miR-3652 1 0 0
chr13:21140637|21140947 hsa-miR-4430 1 0 0
chr13:21140637|21140947 hsa-miR-4449 1 0 0
chr13:21140637|21140947 hsa-miR-3135b 1 0 0
chr13:21140637|21140947 hsa-miR-4466 1 0 0
chr13:21140637|21140947 hsa-miR-4469 0 1 0
chr13:21140637|21140947 hsa-miR-4476 0 1 0
chr13:21140637|21140947 hsa-miR-4479 1 0 0
chr13:21140637|21140947 hsa-miR-4493 0 1 0
chr13:21140637|21140947 hsa-miR-4497 1 0 0
chr13:21140637|21140947 hsa-miR-2392 1 0 0
chr13:21140637|21140947 hsa-miR-4516 1 0 0
chr13:21140637|21140947 hsa-miR-4533 1 0 0
chr13:21140637|21140947 hsa-miR-4656 1 0 0
chr13:21140637|21140947 hsa-miR-4669 1 0 0
chr13:21140637|21140947 hsa-miR-4674 1 0 0
chr13:21140637|21140947 hsa-miR-4689 1 0 0
chr13:21140637|21140947 hsa-miR-4706 1 0 0
chr13:21140637|21140947 hsa-miR-4739 1 0 0
chr13:21140637|21140947 hsa-miR-4751 1 0 0
chr13:21140637|21140947 hsa-miR-4784 1 0 0
chr13:21140637|21140947 hsa-miR-5572 1 0 0
chr13:21140637|21140947 hsa-miR-5787 1 0 0
chr13:21140637|21140947 hsa-miR-6086 1 0 0
chr13:21140637|21140947 hsa-miR-6088 1 0 0
chr13:21140637|21140947 hsa-miR-6126 0 1 0
chr13:21140637|21140947 hsa-miR-6860 1 0 0
chr13:21140637|21140947 hsa-miR-12118 1 0 0
chr13:21140637|21140947 hsa-miR-12127 0 1 0
chr13:21140637|21140947 hsa-miR-138-5p 0 1 0
chr13:21140637|21140947 hsa-miR-18a-3p 0 1 0
chr13:21140637|21140947 hsa-miR-92a-1-5p 0 1 0
chr13:21140637|21140947 hsa-miR-6734-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4731-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4665-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6747-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3150a-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6861-5p 1 0 0
chr13:21140637|21140947 hsa-miR-7106-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6825-5p 0 1 0
chr13:21140637|21140947 hsa-miR-6894-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6857-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6728-5p 1 0 0
chr13:21140637|21140947 hsa-miR-766-5p 1 0 0
chr13:21140637|21140947 hsa-miR-139-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6089 0 1 0
chr13:21140637|21140947 hsa-miR-6757-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6880-5p 1 0 0
chr13:21140637|21140947 hsa-miR-7847-3p 1 0 0
chr13:21140637|21140947 hsa-miR-4695-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6746-5p 1 0 0
chr13:21140637|21140947 hsa-miR-505-5p 0 1 0
chr13:21140637|21140947 hsa-miR-6741-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4655-5p 1 0 0
chr13:21140637|21140947 hsa-miR-8069 1 0 0
chr13:21140637|21140947 hsa-miR-7110-3p 0 1 0
chr13:21140637|21140947 hsa-miR-6787-3p 1 0 0
chr13:21140637|21140947 hsa-miR-1292-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6772-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6732-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6827-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6798-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6782-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3150b-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6735-3p 0 1 0
chr13:21140637|21140947 hsa-miR-1909-5p 1 0 0
chr13:21140637|21140947 hsa-miR-1908-3p 0 1 0
chr13:21140637|21140947 hsa-miR-1908-5p 1 0 0
chr13:21140637|21140947 hsa-miR-877-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3202 1 0 0
chr13:21140637|21140947 hsa-miR-149-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6886-5p 0 1 0
chr13:21140637|21140947 hsa-miR-1236-3p 0 1 0
chr13:21140637|21140947 hsa-miR-6867-3p 0 1 0
chr13:21140637|21140947 hsa-miR-6887-3p 0 1 0
chr13:21140637|21140947 hsa-miR-1468-5p 0 1 0
chr13:21140637|21140947 hsa-miR-6738-3p 0 1 0
chr13:21140637|21140947 hsa-miR-2277-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3670 1 0 0
chr13:21140637|21140947 hsa-miR-4763-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6778-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6812-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6870-5p 1 0 0
chr13:21140637|21140947 hsa-miR-1343-5p 1 0 0
chr13:21140637|21140947 hsa-miR-5001-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6752-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6756-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6803-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6813-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6851-5p 1 0 0
chr13:21140637|21140947 hsa-miR-7107-5p 1 0 0
chr13:21140637|21140947 hsa-miR-10401-5p 1 0 0
chr13:21140637|21140947 hsa-miR-11181-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6722-3p 1 0 0
chr13:21140637|21140947 hsa-miR-6751-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6797-5p 1 0 0
chr13:21140637|21140947 hsa-miR-7111-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3620-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4728-5p 1 0 0
chr13:21140637|21140947 hsa-miR-5196-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6836-5p 1 0 0
chr13:21140637|21140947 hsa-miR-10396a-5p 1 0 0
chr13:21140637|21140947 hsa-miR-10396b-5p 1 0 0
chr13:21140637|21140947 hsa-miR-1909-3p 1 0 0
chr13:21140637|21140947 hsa-miR-328-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4725-3p 1 0 0
chr13:21140637|21140947 hsa-miR-4726-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6777-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6846-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6848-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6858-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6889-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6831-5p 1 0 0
chr13:21140637|21140947 hsa-miR-939-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3198 1 0 0
chr13:21140637|21140947 hsa-miR-6855-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4700-5p 1 0 0
chr13:21140637|21140947 hsa-miR-3173-3p 1 0 0
chr13:21140637|21140947 hsa-miR-3679-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4646-5p 1 0 0
chr13:21140637|21140947 hsa-miR-4747-5p 1 0 0
chr13:21140637|21140947 hsa-miR-6876-5p 0 1 0
chr13:21140637|21140947 hsa-miR-10400-3p 1 0 0
chr13:21140637|21140947 hsa-miR-4768-5p 0 1 0
chr13:21140637|21140947 hsa-miR-4485-3p 0 1 0
chr13:21140637|21140947 hsa-miR-6833-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:21140637|21140947
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MRPPSLPETKNTISSSTQAAPLHPAGLIPNLFPDPKAEGAFTFSRSIGFSGSFLIS
Nucleotide Sequence TTGCGGCCTCCGAGCCTCCCCGAGACCAAAAACACCATCTCCTCCAGCACACAGGCCGCGCCTCTGCACCCTGCGGGACTCATCCCCAACCTCTTCCCGGACCCCAAAGCGGAGGGGGCCTTCACCTTCTCGCGGTCGATCGGTTTCTCTGGCTCCTTCTTAATTTCC
CircID chr13:21140637|21140947
ORF Type ORF2
Protein Length 65
Nucleotide Length 198
Protein Sequence MRTRSSSLFPRRCGLRASPRPKTPSPPAHRPRLCTLRDSSPTSSRTPKRRGPSPSRGRSVSLAPS
Nucleotide Sequence CTGCGAACCCGGAGCTCATCTCTCTTCCCGAGGCGTTGCGGCCTCCGAGCCTCCCCGAGACCAAAAACACCATCTCCTCCAGCACACAGGCCGCGCCTCTGCACCCTGCGGGACTCATCCCCAACCTCTTCCCGGACCCCAAAGCGGAGGGGGCCTTCACCTTCTCGCGGTCGATCGGTTTCTCTGGCTCCTTCTTAA
CircID chr13:21140637|21140947
ORF Type ORF3
Protein Length 83
Nucleotide Length 249
Protein Sequence MRERENGRAEVKNTSCEPGAHLSSRGVAASEPPRDQKHHLLQHTGRASAPCGTHPQPLPGPQSGGGLHLLAVDRFLWLLLNFL
Nucleotide Sequence CTGAGGGAGAGAGAAAACGGAAGGGCAGAAGTTAAAAACACCAGCTGCGAACCCGGAGCTCATCTCTCTTCCCGAGGCGTTGCGGCCTCCGAGCCTCCCCGAGACCAAAAACACCATCTCCTCCAGCACACAGGCCGCGCCTCTGCACCCTGCGGGACTCATCCCCAACCTCTTCCCGGACCCCAAAGCGGAGGGGGCCTTCACCTTCTCGCGGTCGATCGGTTTCTCTGGCTCCTTCTTAATTTCCTC
CircID chr13:21140637|21140947
ORF Type ORF4
Protein Length 82
Nucleotide Length 246
Protein Sequence MGSGKRLGMSPAGCRGAACVLEEMVFLVSGRLGGRNASGREMSSGFAAGVFNFCPSVFSLPQTCPLLLRVFTTNNGRHHRMD
Nucleotide Sequence TTGGGGTCCGGGAAGAGGTTGGGGATGAGTCCCGCAGGGTGCAGAGGCGCGGCCTGTGTGCTGGAGGAGATGGTGTTTTTGGTCTCGGGGAGGCTCGGAGGCCGCAACGCCTCGGGAAGAGAGATGAGCTCCGGGTTCGCAGCTGGTGTTTTTAACTTCTGCCCTTCCGTTTTCTCTCTCCCTCAGACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGAC
CircID chr13:21140637|21140947
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MVFLTSALPFSLSLRHAHCCYGSSPPITAATTEWT
Nucleotide Sequence CTGGTGTTTTTAACTTCTGCCCTTCCGTTTTCTCTCTCCCTCAGACATGCCCACTGTTGCTACGGGTCTTCACCACCAATAACGGCCGCCACCACCGAATGGACG
CircID chr13:21140637|21140947
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence MCAGGDGVFGLGEARRPQRLGKRDELRVRSWCF
Nucleotide Sequence CTGTGTGCTGGAGGAGATGGTGTTTTTGGTCTCGGGGAGGCTCGGAGGCCGCAACGCCTCGGGAAGAGAGATGAGCTCCGGGTTCGCAGCTGGTGTTTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab