CircRNA Information

General Information
circRNA Basic Information
CircID chr13:29513159|29513287
Strand -
CircType exon
Host Gene ENSG00000139514.11;
Algorism CIRI2;
Sequence GGGGGTGGCGTGCACTGGAGCTATGGGGGTGGGGAGGATGCTCGGGTCTCTCCCACTTGCAGAGGCGTGGGGTCCGAAGCATCCGGATGACAGATACACAAAAGGGACAGCAATATGCCTAGAAATCAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:29513159|29513287 hsa-miR-148a-5p 0 0 1
chr13:29513159|29513287 hsa-miR-148a-3p 0 0 1
chr13:29513159|29513287 hsa-miR-204-5p 0 0 1
chr13:29513159|29513287 hsa-miR-204-3p 0 0 1
chr13:29513159|29513287 hsa-miR-211-5p 0 0 1
chr13:29513159|29513287 hsa-miR-211-3p 0 0 1
chr13:29513159|29513287 hsa-miR-137-5p 0 0 1
chr13:29513159|29513287 hsa-miR-137-3p 0 0 1
chr13:29513159|29513287 hsa-miR-152-5p 0 0 1
chr13:29513159|29513287 hsa-miR-152-3p 0 0 1
chr13:29513159|29513287 hsa-miR-185-5p 0 0 1
chr13:29513159|29513287 hsa-miR-185-3p 0 0 1
chr13:29513159|29513287 hsa-miR-148b-5p 0 0 1
chr13:29513159|29513287 hsa-miR-148b-3p 0 0 1
chr13:29513159|29513287 hsa-miR-599 0 0 1
chr13:29513159|29513287 hsa-miR-626 0 0 1
chr13:29513159|29513287 hsa-miR-645 0 0 1
chr13:29513159|29513287 hsa-miR-1279 0 0 1
chr13:29513159|29513287 hsa-miR-1825 0 1 1
chr13:29513159|29513287 hsa-miR-199a-5p 0 0 1
chr13:29513159|29513287 hsa-miR-199b-5p 0 0 1
chr13:29513159|29513287 hsa-miR-612 1 0 0
chr13:29513159|29513287 hsa-miR-1260a 1 0 0
chr13:29513159|29513287 hsa-miR-1260b 1 0 0
chr13:29513159|29513287 hsa-miR-4286 1 0 0
chr13:29513159|29513287 hsa-miR-3650 1 0 0
chr13:29513159|29513287 hsa-miR-3943 1 0 0
chr13:29513159|29513287 hsa-miR-5705 1 1 0
chr13:29513159|29513287 hsa-miR-6860 1 0 0
chr13:29513159|29513287 hsa-miR-7705 0 1 0
chr13:29513159|29513287 hsa-miR-6749-3p 1 1 0
chr13:29513159|29513287 hsa-miR-4747-3p 1 1 0
chr13:29513159|29513287 hsa-miR-149-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6720-5p 1 0 0
chr13:29513159|29513287 hsa-miR-766-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6892-3p 1 0 0
chr13:29513159|29513287 hsa-miR-150-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6806-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6884-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6763-3p 1 0 0
chr13:29513159|29513287 hsa-miR-7108-3p 1 0 0
chr13:29513159|29513287 hsa-miR-4707-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6803-3p 1 0 0
chr13:29513159|29513287 hsa-miR-324-5p 1 0 0
chr13:29513159|29513287 hsa-miR-5196-3p 0 1 0
chr13:29513159|29513287 hsa-miR-2276-3p 0 1 0
chr13:29513159|29513287 hsa-miR-4758-3p 1 0 0
chr13:29513159|29513287 hsa-miR-508-5p 0 1 0
chr13:29513159|29513287 hsa-miR-6793-3p 1 0 0
chr13:29513159|29513287 hsa-miR-1224-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6865-3p 1 0 0
chr13:29513159|29513287 hsa-miR-5591-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6859-3p 1 0 0
chr13:29513159|29513287 hsa-miR-1292-3p 1 0 0
chr13:29513159|29513287 hsa-miR-4433a-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6798-3p 1 0 0
chr13:29513159|29513287 hsa-miR-4433b-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6729-3p 1 0 0
chr13:29513159|29513287 hsa-miR-3162-3p 1 0 0
chr13:29513159|29513287 hsa-miR-1233-5p 0 1 0
chr13:29513159|29513287 hsa-miR-6778-5p 0 1 0
chr13:29513159|29513287 hsa-miR-6866-3p 1 0 0
chr13:29513159|29513287 hsa-miR-5189-5p 1 0 0
chr13:29513159|29513287 hsa-miR-30c-1-3p 0 1 0
chr13:29513159|29513287 hsa-miR-6731-5p 0 1 0
chr13:29513159|29513287 hsa-miR-324-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6756-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6784-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6792-3p 1 0 0
chr13:29513159|29513287 hsa-miR-6862-3p 1 0 0
chr13:29513159|29513287 hsa-miR-3059-5p 1 0 0
chr13:29513159|29513287 hsa-miR-6819-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:29513159|29513287
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MGVGRMLGSLPLAEAWGPKHPDDRYTKGTAICLEI
Nucleotide Sequence ATGGGGGTGGGGAGGATGCTCGGGTCTCTCCCACTTGCAGAGGCGTGGGGTCCGAAGCATCCGGATGACAGATACACAAAAGGGACAGCAATATGCCTAGAAATC
CircID chr13:29513159|29513287
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MELWGWGGCSGLSHLQRRGVRSIRMTDTQKGQQYA
Nucleotide Sequence CTGGAGCTATGGGGGTGGGGAGGATGCTCGGGTCTCTCCCACTTGCAGAGGCGTGGGGTCCGAAGCATCCGGATGACAGATACACAAAAGGGACAGCAATATGCCTAG
CircID chr13:29513159|29513287
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MSSGCFGPHASASGRDPSILPTPIAPVHATP
Nucleotide Sequence CTGTCATCCGGATGCTTCGGACCCCACGCCTCTGCAAGTGGGAGAGACCCGAGCATCCTCCCCACCCCCATAGCTCCAGTGCACGCCACCCCC
CircID chr13:29513159|29513287
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLSLLCICHPDASDPTPLQVGETRASSPPP
Nucleotide Sequence TTGCTGTCCCTTTTGTGTATCTGTCATCCGGATGCTTCGGACCCCACGCCTCTGCAAGTGGGAGAGACCCGAGCATCCTCCCCACCCCCATAG
CircID chr13:29513159|29513287
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MLRTPRLCKWERPEHPPHPHSSSARHP
Nucleotide Sequence ATGCTTCGGACCCCACGCCTCTGCAAGTGGGAGAGACCCGAGCATCCTCCCCACCCCCATAGCTCCAGTGCACGCCACCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab