CircRNA Information

General Information
circRNA Basic Information
CircID chr13:29514230|29514413
Strand +
CircType exon
Host Gene ENSG00000139514.11;
Algorism CIRI2;
Sequence CCCACCCTCCCCACCAGTGCAACAGAAACCACCTGCGTCCACACCCTCACTGCAGCCAAAGGTGCAATTACTTGACCTGCAGCCCCAGCCCACCCTCGGCTCTGCAGCCGGTTCTCCGGGCCCTGGTCACCTCCAGACAGCTGCCTGGCCGGGGCCACTAGGCTGCGGCTGGCCACTGTGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:29514230|29514413 hsa-miR-25-5p 0 0 1
chr13:29514230|29514413 hsa-miR-25-3p 0 0 1
chr13:29514230|29514413 hsa-miR-26b-5p 0 0 1
chr13:29514230|29514413 hsa-miR-26b-3p 0 0 1
chr13:29514230|29514413 hsa-miR-32-5p 0 0 1
chr13:29514230|29514413 hsa-miR-32-3p 0 0 1
chr13:29514230|29514413 hsa-miR-363-5p 0 0 1
chr13:29514230|29514413 hsa-miR-363-3p 0 0 1
chr13:29514230|29514413 hsa-miR-367-5p 0 0 1
chr13:29514230|29514413 hsa-miR-367-3p 0 0 1
chr13:29514230|29514413 hsa-miR-92b-5p 0 0 1
chr13:29514230|29514413 hsa-miR-92b-3p 0 0 1
chr13:29514230|29514413 hsa-miR-589-5p 0 0 1
chr13:29514230|29514413 hsa-miR-589-3p 0 0 1
chr13:29514230|29514413 hsa-miR-604 0 0 1
chr13:29514230|29514413 hsa-miR-626 0 0 1
chr13:29514230|29514413 hsa-miR-647 0 0 1
chr13:29514230|29514413 hsa-miR-657 0 0 1
chr13:29514230|29514413 hsa-miR-541-5p 0 0 1
chr13:29514230|29514413 hsa-miR-541-3p 0 0 1
chr13:29514230|29514413 hsa-miR-939-5p 0 0 1
chr13:29514230|29514413 hsa-miR-939-3p 0 0 1
chr13:29514230|29514413 hsa-miR-1231 0 1 1
chr13:29514230|29514413 hsa-miR-663b 0 1 1
chr13:29514230|29514413 hsa-miR-1205 0 0 1
chr13:29514230|29514413 hsa-miR-1297 0 0 1
chr13:29514230|29514413 hsa-miR-1267 0 0 1
chr13:29514230|29514413 hsa-miR-302f 0 0 1
chr13:29514230|29514413 hsa-miR-491-5p 0 0 1
chr13:29514230|29514413 hsa-miR-654-5p 0 0 1
chr13:29514230|29514413 hsa-miR-876-3p 0 0 1
chr13:29514230|29514413 hsa-miR-128 0 0 1
chr13:29514230|29514413 hsa-miR-26a 0 0 1
chr13:29514230|29514413 hsa-miR-516b 0 0 1
chr13:29514230|29514413 hsa-miR-92a 0 0 1
chr13:29514230|29514413 hsa-miR-507 0 1 0
chr13:29514230|29514413 hsa-miR-608 1 1 0
chr13:29514230|29514413 hsa-miR-762 1 1 0
chr13:29514230|29514413 hsa-miR-921 1 0 0
chr13:29514230|29514413 hsa-miR-1183 1 0 0
chr13:29514230|29514413 hsa-miR-1268a 1 0 0
chr13:29514230|29514413 hsa-miR-1538 0 1 0
chr13:29514230|29514413 hsa-miR-3138 1 0 0
chr13:29514230|29514413 hsa-miR-3196 1 0 0
chr13:29514230|29514413 hsa-miR-4322 1 0 0
chr13:29514230|29514413 hsa-miR-4265 1 0 0
chr13:29514230|29514413 hsa-miR-3621 1 0 0
chr13:29514230|29514413 hsa-miR-3652 1 0 0
chr13:29514230|29514413 hsa-miR-3665 1 0 0
chr13:29514230|29514413 hsa-miR-3911 1 1 0
chr13:29514230|29514413 hsa-miR-3918 0 1 0
chr13:29514230|29514413 hsa-miR-3937 1 0 0
chr13:29514230|29514413 hsa-miR-1268b 1 0 0
chr13:29514230|29514413 hsa-miR-4430 1 0 0
chr13:29514230|29514413 hsa-miR-4465 0 1 0
chr13:29514230|29514413 hsa-miR-4481 1 0 0
chr13:29514230|29514413 hsa-miR-4483 1 0 0
chr13:29514230|29514413 hsa-miR-4488 1 0 0
chr13:29514230|29514413 hsa-miR-4492 1 0 0
chr13:29514230|29514413 hsa-miR-4498 1 1 0
chr13:29514230|29514413 hsa-miR-4505 1 0 0
chr13:29514230|29514413 hsa-miR-4507 1 0 0
chr13:29514230|29514413 hsa-miR-4510 1 0 0
chr13:29514230|29514413 hsa-miR-4514 0 1 0
chr13:29514230|29514413 hsa-miR-1587 1 1 0
chr13:29514230|29514413 hsa-miR-4537 1 1 0
chr13:29514230|29514413 hsa-miR-4651 1 0 0
chr13:29514230|29514413 hsa-miR-4656 1 0 0
chr13:29514230|29514413 hsa-miR-4673 1 1 0
chr13:29514230|29514413 hsa-miR-4692 0 1 0
chr13:29514230|29514413 hsa-miR-4706 1 0 0
chr13:29514230|29514413 hsa-miR-4710 1 0 0
chr13:29514230|29514413 hsa-miR-4734 1 0 0
chr13:29514230|29514413 hsa-miR-4741 1 0 0
chr13:29514230|29514413 hsa-miR-548ax 0 1 0
chr13:29514230|29514413 hsa-miR-5787 1 1 0
chr13:29514230|29514413 hsa-miR-6085 1 0 0
chr13:29514230|29514413 hsa-miR-6127 1 0 0
chr13:29514230|29514413 hsa-miR-6130 1 0 0
chr13:29514230|29514413 hsa-miR-8089 1 0 0
chr13:29514230|29514413 hsa-miR-128-3p 0 1 0
chr13:29514230|29514413 hsa-miR-17-3p 0 1 0
chr13:29514230|29514413 hsa-miR-92a-2-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6734-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6747-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6825-5p 0 1 0
chr13:29514230|29514413 hsa-miR-4687-3p 1 0 0
chr13:29514230|29514413 hsa-miR-6799-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6804-5p 1 1 0
chr13:29514230|29514413 hsa-miR-4722-5p 1 0 0
chr13:29514230|29514413 hsa-miR-3677-5p 0 1 0
chr13:29514230|29514413 hsa-miR-1301-3p 1 1 0
chr13:29514230|29514413 hsa-miR-7160-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6820-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6721-5p 1 0 0
chr13:29514230|29514413 hsa-miR-7108-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6772-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6793-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6732-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4793-3p 1 0 0
chr13:29514230|29514413 hsa-miR-3934-3p 1 0 0
chr13:29514230|29514413 hsa-miR-1226-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6784-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4640-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6753-5p 0 1 0
chr13:29514230|29514413 hsa-miR-885-3p 1 0 0
chr13:29514230|29514413 hsa-miR-3127-5p 0 1 0
chr13:29514230|29514413 hsa-miR-1228-5p 1 0 0
chr13:29514230|29514413 hsa-miR-296-3p 1 0 0
chr13:29514230|29514413 hsa-miR-7854-3p 0 1 0
chr13:29514230|29514413 hsa-miR-4787-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6886-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4684-3p 1 0 0
chr13:29514230|29514413 hsa-miR-6877-5p 1 0 0
chr13:29514230|29514413 hsa-miR-516b-5p 0 1 0
chr13:29514230|29514413 hsa-miR-574-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4707-5p 1 1 0
chr13:29514230|29514413 hsa-miR-3681-5p 1 0 0
chr13:29514230|29514413 hsa-miR-216a-3p 0 1 0
chr13:29514230|29514413 hsa-miR-196a-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4763-3p 1 0 0
chr13:29514230|29514413 hsa-miR-6769b-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6787-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6812-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6865-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6893-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6752-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6754-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6756-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6803-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6813-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6851-5p 1 1 0
chr13:29514230|29514413 hsa-miR-7110-5p 1 0 0
chr13:29514230|29514413 hsa-miR-10401-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6751-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6763-5p 0 1 0
chr13:29514230|29514413 hsa-miR-3620-5p 1 1 0
chr13:29514230|29514413 hsa-miR-6836-5p 1 0 0
chr13:29514230|29514413 hsa-miR-1909-3p 1 0 0
chr13:29514230|29514413 hsa-miR-4649-5p 1 0 0
chr13:29514230|29514413 hsa-miR-4685-5p 1 1 0
chr13:29514230|29514413 hsa-miR-4726-5p 0 1 0
chr13:29514230|29514413 hsa-miR-4745-3p 0 1 0
chr13:29514230|29514413 hsa-miR-6729-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6846-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6848-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6883-5p 1 1 0
chr13:29514230|29514413 hsa-miR-3940-5p 1 0 0
chr13:29514230|29514413 hsa-miR-10398-3p 1 1 0
chr13:29514230|29514413 hsa-miR-6785-5p 0 1 0
chr13:29514230|29514413 hsa-miR-6724-5p 1 0 0
chr13:29514230|29514413 hsa-miR-6837-5p 0 1 0
chr13:29514230|29514413 hsa-miR-10394-5p 1 1 0
chr13:29514230|29514413 hsa-miR-196b-5p 1 0 0
chr13:29514230|29514413 hsa-miR-548b-5p 1 1 0
chr13:29514230|29514413 hsa-miR-548j-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548am-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548ar-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548au-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548c-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548o-5p 0 1 0
chr13:29514230|29514413 hsa-miR-548i 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:29514230|29514413
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MQPKVQLLDLQPQPTLGSAAGSPGPGHLQTAAWPGPLGCGWPLCL
Nucleotide Sequence CTGCAGCCAAAGGTGCAATTACTTGACCTGCAGCCCCAGCCCACCCTCGGCTCTGCAGCCGGTTCTCCGGGCCCTGGTCACCTCCAGACAGCTGCCTGGCCGGGGCCACTAGGCTGCGGCTGGCCACTGTGTCTC
CircID chr13:29514230|29514413
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MRPHPHCSQRCNYLTCSPSPPSALQPVLRALVTSRQLPGRGH
Nucleotide Sequence CTGCGTCCACACCCTCACTGCAGCCAAAGGTGCAATTACTTGACCTGCAGCCCCAGCCCACCCTCGGCTCTGCAGCCGGTTCTCCGGGCCCTGGTCACCTCCAGACAGCTGCCTGGCCGGGGCCACTAG
CircID chr13:29514230|29514413
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MSGGDQGPENRLQSRGWAGAAGQVIAPLAAVRVWTQVVSVALVGRV
Nucleotide Sequence CTGTCTGGAGGTGACCAGGGCCCGGAGAACCGGCTGCAGAGCCGAGGGTGGGCTGGGGCTGCAGGTCAAGTAATTGCACCTTTGGCTGCAGTGAGGGTGTGGACGCAGGTGGTTTCTGTTGCACTGGTGGGGAGGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab