CircRNA Information

General Information
circRNA Basic Information
CircID chr13:31138460|31138830
Strand -
CircType exon
Host Gene ENSG00000120694.18;
Algorism CIRI2;
Sequence TCTTTTTAGCCTGAGCATTCATGACATTATTCATCCATTCCATCACTTCATTAACAGACTTCTCCACTTTTTTCATTTCAGACTCATCAATATGGTTGTATTTCTCATCCTGAACAAAAATAACACGGTCATTCTGTAGAATTTATTGAACAATAGTATCTCATTTGACTCAACTTTCCAGGAAGCTCAAGTTCAAATCTACCTCTAACCTCAAATACCAAAATTTCAAAGTTAAGACTATTCATGATGATTCCCAGCTTAAGTGTTAGCTTATTAAAATCTAGGTTAACTTCCTCCCTATGTACAAAAAGACTGACTCACCTTATTTCTGAAGTCAGCTGCTATCTTGGCATAATGCTGCAGCCTCTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:31138460|31138830 hsa-let-7b-5p 0 0 1
chr13:31138460|31138830 hsa-let-7b-3p 0 0 1
chr13:31138460|31138830 hsa-let-7c-5p 0 0 1
chr13:31138460|31138830 hsa-let-7c-3p 0 0 1
chr13:31138460|31138830 hsa-let-7d-5p 0 0 1
chr13:31138460|31138830 hsa-let-7d-3p 0 0 1
chr13:31138460|31138830 hsa-let-7e-5p 0 0 1
chr13:31138460|31138830 hsa-let-7e-3p 0 0 1
chr13:31138460|31138830 hsa-miR-15a-5p 0 0 1
chr13:31138460|31138830 hsa-miR-15a-3p 0 0 1
chr13:31138460|31138830 hsa-miR-18a-5p 0 0 1
chr13:31138460|31138830 hsa-miR-18a-3p 0 0 1
chr13:31138460|31138830 hsa-miR-98-5p 0 0 1
chr13:31138460|31138830 hsa-miR-98-3p 0 0 1
chr13:31138460|31138830 hsa-miR-107 0 0 1
chr13:31138460|31138830 hsa-let-7g-5p 0 0 1
chr13:31138460|31138830 hsa-let-7g-3p 0 0 1
chr13:31138460|31138830 hsa-let-7i-5p 0 0 1
chr13:31138460|31138830 hsa-let-7i-3p 0 0 1
chr13:31138460|31138830 hsa-miR-15b-5p 0 0 1
chr13:31138460|31138830 hsa-miR-15b-3p 0 0 1
chr13:31138460|31138830 hsa-miR-141-5p 0 0 1
chr13:31138460|31138830 hsa-miR-141-3p 0 0 1
chr13:31138460|31138830 hsa-miR-195-5p 0 0 1
chr13:31138460|31138830 hsa-miR-195-3p 0 0 1
chr13:31138460|31138830 hsa-miR-206 0 0 1
chr13:31138460|31138830 hsa-miR-200a-5p 0 0 1
chr13:31138460|31138830 hsa-miR-200a-3p 0 0 1
chr13:31138460|31138830 hsa-miR-376c-5p 0 0 1
chr13:31138460|31138830 hsa-miR-376c-3p 0 0 1
chr13:31138460|31138830 hsa-miR-375-5p 0 0 1
chr13:31138460|31138830 hsa-miR-375-3p 0 0 1
chr13:31138460|31138830 hsa-miR-424-5p 0 0 1
chr13:31138460|31138830 hsa-miR-424-3p 0 0 1
chr13:31138460|31138830 hsa-miR-18b-5p 0 0 1
chr13:31138460|31138830 hsa-miR-18b-3p 0 0 1
chr13:31138460|31138830 hsa-miR-484 0 0 1
chr13:31138460|31138830 hsa-miR-497-5p 0 0 1
chr13:31138460|31138830 hsa-miR-497-3p 0 0 1
chr13:31138460|31138830 hsa-miR-503-5p 0 0 1
chr13:31138460|31138830 hsa-miR-503-3p 0 0 1
chr13:31138460|31138830 hsa-miR-539-5p 0 0 1
chr13:31138460|31138830 hsa-miR-539-3p 0 0 1
chr13:31138460|31138830 hsa-miR-569 0 0 1
chr13:31138460|31138830 hsa-miR-573 0 0 1
chr13:31138460|31138830 hsa-miR-613 0 0 1
chr13:31138460|31138830 hsa-miR-617 0 0 1
chr13:31138460|31138830 hsa-miR-622 0 0 1
chr13:31138460|31138830 hsa-miR-627-5p 0 0 1
chr13:31138460|31138830 hsa-miR-627-3p 0 0 1
chr13:31138460|31138830 hsa-miR-646 0 0 1
chr13:31138460|31138830 hsa-miR-877-5p 0 0 1
chr13:31138460|31138830 hsa-miR-877-3p 0 0 1
chr13:31138460|31138830 hsa-miR-924 0 0 1
chr13:31138460|31138830 hsa-miR-1304-5p 0 0 1
chr13:31138460|31138830 hsa-miR-1304-3p 0 0 1
chr13:31138460|31138830 hsa-miR-1255a 0 0 1
chr13:31138460|31138830 hsa-miR-1279 0 0 1
chr13:31138460|31138830 hsa-miR-1321 0 0 1
chr13:31138460|31138830 hsa-miR-139-5p 0 0 1
chr13:31138460|31138830 hsa-miR-485-5p 0 0 1
chr13:31138460|31138830 hsa-miR-1184 0 0 1
chr13:31138460|31138830 hsa-miR-875-3p 0 0 1
chr13:31138460|31138830 hsa-miR-516a-3p 0 0 1
chr13:31138460|31138830 hsa-miR-105 0 0 1
chr13:31138460|31138830 hsa-miR-103 0 0 1
chr13:31138460|31138830 hsa-miR-16 0 0 1
chr13:31138460|31138830 hsa-miR-1255b 0 0 1
chr13:31138460|31138830 hsa-let-7a 0 0 1
chr13:31138460|31138830 hsa-let-7f 0 0 1
chr13:31138460|31138830 hsa-miR-1 0 0 1
chr13:31138460|31138830 hsa-miR-203 0 0 1
chr13:31138460|31138830 hsa-miR-765 1 0 0
chr13:31138460|31138830 hsa-miR-921 1 0 0
chr13:31138460|31138830 hsa-miR-3945 1 0 0
chr13:31138460|31138830 hsa-miR-4739 1 0 0
chr13:31138460|31138830 hsa-miR-5703 1 0 0
chr13:31138460|31138830 hsa-miR-6127 1 0 0
chr13:31138460|31138830 hsa-miR-6128 1 0 0
chr13:31138460|31138830 hsa-miR-6133 1 0 0
chr13:31138460|31138830 hsa-miR-8060 1 0 0
chr13:31138460|31138830 hsa-miR-12114 1 0 0
chr13:31138460|31138830 hsa-miR-6734-5p 1 0 0
chr13:31138460|31138830 hsa-miR-4731-5p 1 0 0
chr13:31138460|31138830 hsa-miR-7106-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6825-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6894-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6799-5p 1 0 0
chr13:31138460|31138830 hsa-miR-8071 1 0 0
chr13:31138460|31138830 hsa-miR-5187-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6757-5p 1 0 0
chr13:31138460|31138830 hsa-miR-1301-3p 1 0 0
chr13:31138460|31138830 hsa-miR-6716-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6796-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6514-5p 1 0 0
chr13:31138460|31138830 hsa-miR-7109-5p 1 0 0
chr13:31138460|31138830 hsa-miR-542-5p 1 0 0
chr13:31138460|31138830 hsa-miR-3691-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6771-5p 1 0 0
chr13:31138460|31138830 hsa-miR-149-3p 1 0 0
chr13:31138460|31138830 hsa-miR-3162-5p 1 0 0
chr13:31138460|31138830 hsa-miR-194-3p 1 0 0
chr13:31138460|31138830 hsa-miR-6769b-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6812-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6819-5p 1 0 0
chr13:31138460|31138830 hsa-miR-1249-5p 1 0 0
chr13:31138460|31138830 hsa-miR-7111-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6780b-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6858-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6856-5p 1 0 0
chr13:31138460|31138830 hsa-miR-6855-5p 1 0 0
chr13:31138460|31138830 hsa-miR-4646-5p 1 0 0
chr13:31138460|31138830 hsa-miR-4716-3p 1 0 0
chr13:31138460|31138830 hsa-miR-6849-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:31138460|31138830
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MMIPSLSVSLLKSRLTSSLCTKRLTHLISEVSCYLGIMLQPL
Nucleotide Sequence ATGATGATTCCCAGCTTAAGTGTTAGCTTATTAAAATCTAGGTTAACTTCCTCCCTATGTACAAAAAGACTGACTCACCTTATTTCTGAAGTCAGCTGCTATCTTGGCATAATGCTGCAGCCTCTG
CircID chr13:31138460|31138830
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MSIHDIIHPFHHFINRLLHFFHFRLINMVVFLILNKNNTVIL
Nucleotide Sequence CTGAGCATTCATGACATTATTCATCCATTCCATCACTTCATTAACAGACTTCTCCACTTTTTTCATTTCAGACTCATCAATATGGTTGTATTTCTCATCCTGAACAAAAATAACACGGTCATTCTGTAG
CircID chr13:31138460|31138830
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MTLFIHSITSLTDFSTFFISDSSIWLYFSS
Nucleotide Sequence ATGACATTATTCATCCATTCCATCACTTCATTAACAGACTTCTCCACTTTTTTCATTTCAGACTCATCAATATGGTTGTATTTCTCATCCTGA
CircID chr13:31138460|31138830
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MTQLSRKLKFKSTSNLKYQNFKVKTIHDDSQLKC
Nucleotide Sequence TTGACTCAACTTTCCAGGAAGCTCAAGTTCAAATCTACCTCTAACCTCAAATACCAAAATTTCAAAGTTAAGACTATTCATGATGATTCCCAGCTTAAGTGTTAG
CircID chr13:31138460|31138830
ORF Type ORF5
Protein Length 42
Nucleotide Length 129
Protein Sequence MGIIMNSLNFEILVFEVRGRFELELPGKLSQMRYYCSINSTE
Nucleotide Sequence CTGGGAATCATCATGAATAGTCTTAACTTTGAAATTTTGGTATTTGAGGTTAGAGGTAGATTTGAACTTGAGCTTCCTGGAAAGTTGAGTCAAATGAGATACTATTGTTCAATAAATTCTACAGAATGA
CircID chr13:31138460|31138830
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MKKVEKSVNEVMEWMNNVMNAQAKK
Nucleotide Sequence ATGAAAAAAGTGGAGAAGTCTGTTAATGAAGTGATGGAATGGATGAATAATGTCATGAATGCTCAGGCTAAAAAG
CircID chr13:31138460|31138830
ORF Type ORF7
Protein Length 26
Nucleotide Length 81
Protein Sequence MFNKFYRMTVLFLFRMRNTTILMSLK
Nucleotide Sequence TTGTTCAATAAATTCTACAGAATGACCGTGTTATTTTTGTTCAGGATGAGAAATACAACCATATTGATGAGTCTGAAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab