CircRNA Information

General Information
circRNA Basic Information
CircID chr13:32419989|32420142
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGGCAGTGCTGCCACCCACCCCACCAGGGCCAAGTCCTGTCCTTGGAGAGCCAAGCCTCAATCACTGCTAGCCTCAAGTGTCCCCAAGCCACAGTGGCTAGGGGGACTCAGGGAACAGTTCCCAGTCTGCCCTACTTCTCTTACCTTTACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:32419989|32420142 hsa-miR-328-5p 0 0 1
chr13:32419989|32420142 hsa-miR-328-3p 0 0 1
chr13:32419989|32420142 hsa-miR-608 1 1 1
chr13:32419989|32420142 hsa-miR-621 0 0 1
chr13:32419989|32420142 hsa-miR-541-5p 0 0 1
chr13:32419989|32420142 hsa-miR-541-3p 0 0 1
chr13:32419989|32420142 hsa-miR-760 1 0 1
chr13:32419989|32420142 hsa-miR-1291 0 0 1
chr13:32419989|32420142 hsa-miR-1293 0 0 1
chr13:32419989|32420142 hsa-miR-1304-5p 0 0 1
chr13:32419989|32420142 hsa-miR-1304-3p 0 0 1
chr13:32419989|32420142 hsa-miR-548m 0 0 1
chr13:32419989|32420142 hsa-miR-1292-5p 0 0 1
chr13:32419989|32420142 hsa-miR-1292-3p 0 0 1
chr13:32419989|32420142 hsa-miR-885-3p 0 0 1
chr13:32419989|32420142 hsa-miR-485-5p 1 1 1
chr13:32419989|32420142 hsa-miR-654-5p 0 0 1
chr13:32419989|32420142 hsa-miR-342-5p 0 0 1
chr13:32419989|32420142 hsa-miR-125a-5p 0 1 1
chr13:32419989|32420142 hsa-miR-515-5p 0 0 1
chr13:32419989|32420142 hsa-miR-1274a 0 0 1
chr13:32419989|32420142 hsa-miR-125b 0 0 1
chr13:32419989|32420142 hsa-miR-1268a 1 0 0
chr13:32419989|32420142 hsa-miR-2861 1 0 0
chr13:32419989|32420142 hsa-miR-4298 1 0 0
chr13:32419989|32420142 hsa-miR-4316 1 0 0
chr13:32419989|32420142 hsa-miR-4321 1 0 0
chr13:32419989|32420142 hsa-miR-4260 1 0 0
chr13:32419989|32420142 hsa-miR-1268b 1 0 0
chr13:32419989|32420142 hsa-miR-4476 1 0 0
chr13:32419989|32420142 hsa-miR-4489 1 0 0
chr13:32419989|32420142 hsa-miR-4494 0 1 0
chr13:32419989|32420142 hsa-miR-4515 1 0 0
chr13:32419989|32420142 hsa-miR-4651 1 1 0
chr13:32419989|32420142 hsa-miR-4688 1 0 0
chr13:32419989|32420142 hsa-miR-4739 1 0 0
chr13:32419989|32420142 hsa-miR-5090 1 0 0
chr13:32419989|32420142 hsa-miR-6124 1 0 0
chr13:32419989|32420142 hsa-miR-7974 1 0 0
chr13:32419989|32420142 hsa-miR-8059 0 1 0
chr13:32419989|32420142 hsa-miR-8062 0 1 0
chr13:32419989|32420142 hsa-miR-8083 0 1 0
chr13:32419989|32420142 hsa-miR-8089 1 0 0
chr13:32419989|32420142 hsa-miR-370-3p 1 0 0
chr13:32419989|32420142 hsa-miR-92a-2-5p 0 1 0
chr13:32419989|32420142 hsa-miR-4700-3p 1 1 0
chr13:32419989|32420142 hsa-miR-6765-5p 1 0 0
chr13:32419989|32420142 hsa-miR-125a-3p 1 0 0
chr13:32419989|32420142 hsa-miR-6089 1 0 0
chr13:32419989|32420142 hsa-miR-4474-3p 0 1 0
chr13:32419989|32420142 hsa-miR-6759-5p 1 0 0
chr13:32419989|32420142 hsa-miR-197-5p 0 1 0
chr13:32419989|32420142 hsa-miR-7845-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6742-5p 1 1 0
chr13:32419989|32420142 hsa-miR-3151-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6748-5p 0 1 0
chr13:32419989|32420142 hsa-miR-2467-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6881-5p 0 1 0
chr13:32419989|32420142 hsa-miR-6782-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6810-5p 0 1 0
chr13:32419989|32420142 hsa-miR-185-5p 1 0 0
chr13:32419989|32420142 hsa-miR-4640-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6824-5p 1 0 0
chr13:32419989|32420142 hsa-miR-194-3p 1 0 0
chr13:32419989|32420142 hsa-miR-450a-2-3p 0 1 0
chr13:32419989|32420142 hsa-miR-7112-5p 1 0 0
chr13:32419989|32420142 hsa-miR-383-3p 0 1 0
chr13:32419989|32420142 hsa-miR-4649-3p 0 1 0
chr13:32419989|32420142 hsa-miR-670-5p 0 1 0
chr13:32419989|32420142 hsa-miR-6769b-5p 1 1 0
chr13:32419989|32420142 hsa-miR-6816-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6870-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6737-5p 1 1 0
chr13:32419989|32420142 hsa-miR-6756-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6769a-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6819-5p 0 1 0
chr13:32419989|32420142 hsa-miR-6879-5p 1 0 0
chr13:32419989|32420142 hsa-miR-5196-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6862-5p 1 0 0
chr13:32419989|32420142 hsa-miR-4632-5p 1 1 0
chr13:32419989|32420142 hsa-miR-4685-5p 1 0 0
chr13:32419989|32420142 hsa-miR-4745-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6735-5p 1 1 0
chr13:32419989|32420142 hsa-miR-365a-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6856-5p 1 0 0
chr13:32419989|32420142 hsa-miR-7843-5p 0 1 0
chr13:32419989|32420142 hsa-miR-4665-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6855-5p 1 0 0
chr13:32419989|32420142 hsa-miR-6766-5p 0 1 0
chr13:32419989|32420142 hsa-miR-6791-5p 1 0 0
chr13:32419989|32420142 hsa-miR-3529-5p 1 1 0
chr13:32419989|32420142 hsa-miR-9851-5p 1 0 0
chr13:32419989|32420142 hsa-miR-125b-5p 0 1 0
chr13:32419989|32420142 hsa-miR-519e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:32419989|32420142
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LGSAATHPTRAKSCPWRAKPQSLLASSVPKPQWLGGLREQFPVCPTSLTFT
Nucleotide Sequence CTGGGCAGTGCTGCCACCCACCCCACCAGGGCCAAGTCCTGTCCTTGGAGAGCCAAGCCTCAATCACTGCTAGCCTCAAGTGTCCCCAAGCCACAGTGGCTAGGGGGACTCAGGGAACAGTTCCCAGTCTGCCCTACTTCTCTTACCTTTACC
CircID chr13:32419989|32420142
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MSLESQASITASLKCPQATVARGTQGTVPSLPYFSYLY
Nucleotide Sequence CTGTCCTTGGAGAGCCAAGCCTCAATCACTGCTAGCCTCAAGTGTCCCCAAGCCACAGTGGCTAGGGGGACTCAGGGAACAGTTCCCAGTCTGCCCTACTTCTCTTACCTTTAC
CircID chr13:32419989|32420142
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MRLAVIEAWLSKDRTWPWWGGWQHCP
Nucleotide Sequence TTGAGGCTAGCAGTGATTGAGGCTTGGCTCTCCAAGGACAGGACTTGGCCCTGGTGGGGTGGGTGGCAGCACTGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab