CircNet

General Information

circRNA Basic Information

CircID	chr13:42208959\|42210765
Strand	+
CircType	exon
Host Gene	ENSG00000102780.16;
Algorism	find_circ;CIRI2;DCC;
Sequence	ATATTTGCTGCACCATCCTTTGATGACAAGATCCTGGAAGTTGTAGCAATATTTGATAGCATGCAAATGGCAGTTTCAAGGGTCATTAAACTGCAGCATCATCGAATAGCCCAGTGCCGTACAGTGAAAATCACTATATTTGGTGACGAAGGAGTCCCAGTGCAAGTGGATGGTGAAGCGTGGGTTCAGCCTCCAGGGATTATCAAAATTGTGCACAAAAACAGAGCACAAATGCTAACAAGGGACAGAGCCTTTGAGAGCACTCTGAAATCTTGGGAAGATAAGCAGAAGTGTGATTCTGGTAAACCAGTTCTCCGAACCCATTTGTACATCCATCACGCCATTGACTTGGCAACAGAAGAGGTGTCGCAGATGCAGCTATGCTCCCAGGCTGCAGAGGAGCTCATTACTAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr13:42208959\|42210765	hsa-miR-17-3p	0	1	1
chr13:42208959\|42210765	hsa-miR-187-5p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr13:42208959\|42210765
ORF Type	ORF1
Protein Length	117
Nucleotide Length	351
Protein Sequence	MQMAVSRVIKLQHHRIAQCRTVKITIFGDEGVPVQVDGEAWVQPPGIIKIVHKNRAQMLTRDRAFESTLKSWEDKQKCDSGKPVLRTHLYIHHAIDLATEEVSQMQLCSQAAEELIT
Nucleotide Sequence	ATGCAAATGGCAGTTTCAAGGGTCATTAAACTGCAGCATCATCGAATAGCCCAGTGCCGTACAGTGAAAATCACTATATTTGGTGACGAAGGAGTCCCAGTGCAAGTGGATGGTGAAGCGTGGGTTCAGCCTCCAGGGATTATCAAAATTGTGCACAAAAACAGAGCACAAATGCTAACAAGGGACAGAGCCTTTGAGAGCACTCTGAAATCTTGGGAAGATAAGCAGAAGTGTGATTCTGGTAAACCAGTTCTCCGAACCCATTTGTACATCCATCACGCCATTGACTTGGCAACAGAAGAGGTGTCGCAGATGCAGCTATGCTCCCAGGCTGCAGAGGAGCTCATTACT

CircID	chr13:42208959\|42210765
ORF Type	ORF2
Protein Length	49
Nucleotide Length	147
Protein Sequence	MYKWVRRTGLPESHFCLSSQDFRVLSKALSLVSICALFLCTILIIPGG*
Nucleotide Sequence	ATGTACAAATGGGTTCGGAGAACTGGTTTACCAGAATCACACTTCTGCTTATCTTCCCAAGATTTCAGAGTGCTCTCAAAGGCTCTGTCCCTTGTTAGCATTTGTGCTCTGTTTTTGTGCACAATTTTGATAATCCCTGGAGGCTGA

CircID	chr13:42208959\|42210765
ORF Type	ORF3
Protein Length	34
Nucleotide Length	102
Protein Sequence	MDVQMGSENWFTRITLLLIFPRFQSALKGSVPC*
Nucleotide Sequence	ATGGATGTACAAATGGGTTCGGAGAACTGGTTTACCAGAATCACACTTCTGCTTATCTTCCCAAGATTTCAGAGTGCTCTCAAAGGCTCTGTCCCTTGTTAG

CircID	chr13:42208959\|42210765
ORF Type	ORF4
Protein Length	51
Nucleotide Length	153
Protein Sequence	LPSQWRDGCTNGFGELVYQNHTSAYLPKISECSQRLCPLLAFVLCFCAQF*
Nucleotide Sequence	TTGCCAAGTCAATGGCGTGATGGATGTACAAATGGGTTCGGAGAACTGGTTTACCAGAATCACACTTCTGCTTATCTTCCCAAGATTTCAGAGTGCTCTCAAAGGCTCTGTCCCTTGTTAGCATTTGTGCTCTGTTTTTGTGCACAATTTTGA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr13:42208959\|42210765	NOP56	0	0	1
chr13:42208959\|42210765	ELAVL1	2	1	0
chr13:42208959\|42210765	U2AF2	3	3	0
chr13:42208959\|42210765	CSTF2T	0	0	2
chr13:42208959\|42210765	DDX54	0	0	6
chr13:42208959\|42210765	IGF2BP2	0	1	0
chr13:42208959\|42210765	EIF4A3	0	2	7
chr13:42208959\|42210765	FBL	0	0	1

CircRNA Information