CircRNA Information

General Information
circRNA Basic Information
CircID chr13:42303444|42303658
Strand -
CircType exon
Host Gene ENSG00000023516.8;
Algorism CIRI2;
Sequence CACAAAATCAGCAGACAGGGTCACTTATGCAGAAAAGTTGTCACCTCTTACAGGTCAAGCTTGCAGATACTGTGACCTTAAAGAACTCCACAATTGCACTGGAAATTCATCTCAGCACTTTTTCAGACAGGGTTCTCTCGCCAGTAGTAAGCCAGCTTCTAATCCAAAATTTAGCAGCCGCTATCAGAAATCTAGGATTTTTCATCTCAGTGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:42303444|42303658 hsa-miR-17-5p 0 0 1
chr13:42303444|42303658 hsa-miR-17-3p 0 0 1
chr13:42303444|42303658 hsa-miR-20a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-20a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-27a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-27a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-93-5p 0 0 1
chr13:42303444|42303658 hsa-miR-93-3p 0 0 1
chr13:42303444|42303658 hsa-miR-106a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-106a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-192-5p 0 0 1
chr13:42303444|42303658 hsa-miR-192-3p 0 0 1
chr13:42303444|42303658 hsa-miR-148a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-148a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-10a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-10a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-10b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-10b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-215-5p 0 0 1
chr13:42303444|42303658 hsa-miR-215-3p 0 0 1
chr13:42303444|42303658 hsa-miR-27b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-27b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-130a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-130a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-143-5p 0 0 1
chr13:42303444|42303658 hsa-miR-143-3p 0 0 1
chr13:42303444|42303658 hsa-miR-144-5p 0 0 1
chr13:42303444|42303658 hsa-miR-144-3p 0 0 1
chr13:42303444|42303658 hsa-miR-152-5p 0 0 1
chr13:42303444|42303658 hsa-miR-152-3p 0 0 1
chr13:42303444|42303658 hsa-miR-106b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-106b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-302a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-302a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-301a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-301a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-130b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-130b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-302b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-302b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-302c-5p 0 0 1
chr13:42303444|42303658 hsa-miR-302c-3p 0 0 1
chr13:42303444|42303658 hsa-miR-302d-5p 0 0 1
chr13:42303444|42303658 hsa-miR-302d-3p 0 0 1
chr13:42303444|42303658 hsa-miR-372-5p 0 0 1
chr13:42303444|42303658 hsa-miR-372-3p 0 0 1
chr13:42303444|42303658 hsa-miR-373-5p 0 0 1
chr13:42303444|42303658 hsa-miR-373-3p 0 0 1
chr13:42303444|42303658 hsa-miR-148b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-148b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-346 0 0 1
chr13:42303444|42303658 hsa-miR-20b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-20b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-193b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-193b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-520e-5p 0 0 1
chr13:42303444|42303658 hsa-miR-520e-3p 0 0 1
chr13:42303444|42303658 hsa-miR-520b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-520b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-519d-5p 0 0 1
chr13:42303444|42303658 hsa-miR-519d-3p 0 0 1
chr13:42303444|42303658 hsa-miR-504-5p 0 0 1
chr13:42303444|42303658 hsa-miR-504-3p 0 0 1
chr13:42303444|42303658 hsa-miR-589-5p 0 0 1
chr13:42303444|42303658 hsa-miR-589-3p 0 0 1
chr13:42303444|42303658 hsa-miR-631 0 0 1
chr13:42303444|42303658 hsa-miR-632 0 0 1
chr13:42303444|42303658 hsa-miR-454-5p 0 0 1
chr13:42303444|42303658 hsa-miR-454-3p 0 0 1
chr13:42303444|42303658 hsa-miR-892b 0 0 1
chr13:42303444|42303658 hsa-miR-301b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-301b-3p 0 0 1
chr13:42303444|42303658 hsa-miR-302e 0 0 1
chr13:42303444|42303658 hsa-miR-1825 0 0 1
chr13:42303444|42303658 hsa-miR-145-5p 0 0 1
chr13:42303444|42303658 hsa-miR-512-3p 0 0 1
chr13:42303444|42303658 hsa-miR-199a-5p 0 0 1
chr13:42303444|42303658 hsa-miR-339-5p 0 0 1
chr13:42303444|42303658 hsa-miR-199b-5p 0 0 1
chr13:42303444|42303658 hsa-miR-520d-3p 0 0 1
chr13:42303444|42303658 hsa-miR-513a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-520a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-520c-3p 0 0 1
chr13:42303444|42303658 hsa-miR-193a-3p 0 0 1
chr13:42303444|42303658 hsa-miR-548c-3p 0 0 1
chr13:42303444|42303658 hsa-miR-128 0 0 1
chr13:42303444|42303658 hsa-miR-544 0 0 1
chr13:42303444|42303658 hsa-miR-549 0 0 1
chr13:42303444|42303658 hsa-miR-626 0 1 0
chr13:42303444|42303658 hsa-miR-4288 0 1 0
chr13:42303444|42303658 hsa-miR-4421 1 1 0
chr13:42303444|42303658 hsa-miR-4453 0 1 0
chr13:42303444|42303658 hsa-miR-3960 1 0 0
chr13:42303444|42303658 hsa-miR-4751 1 0 0
chr13:42303444|42303658 hsa-miR-8079 0 1 0
chr13:42303444|42303658 hsa-miR-9985 0 1 0
chr13:42303444|42303658 hsa-miR-370-3p 1 0 0
chr13:42303444|42303658 hsa-miR-4687-3p 1 0 0
chr13:42303444|42303658 hsa-miR-5187-5p 1 0 0
chr13:42303444|42303658 hsa-miR-100-3p 0 1 0
chr13:42303444|42303658 hsa-miR-6829-5p 1 0 0
chr13:42303444|42303658 hsa-miR-7109-5p 1 0 0
chr13:42303444|42303658 hsa-miR-3614-5p 1 0 0
chr13:42303444|42303658 hsa-miR-485-5p 1 0 0
chr13:42303444|42303658 hsa-miR-2276-3p 0 1 0
chr13:42303444|42303658 hsa-miR-3120-5p 0 1 0
chr13:42303444|42303658 hsa-miR-10400-5p 1 0 0
chr13:42303444|42303658 hsa-miR-18b-5p 1 0 0
chr13:42303444|42303658 hsa-miR-320a-3p 1 0 0
chr13:42303444|42303658 hsa-miR-320b 1 0 0
chr13:42303444|42303658 hsa-miR-3130-5p 1 0 0
chr13:42303444|42303658 hsa-miR-370-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr13:42303444|42303658
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MSPLTGQACRYCDLKELHNCTGNSSQHFFRQGSLASSKPASNPKFSSRYQKSRIFHLSV
Nucleotide Sequence TTGTCACCTCTTACAGGTCAAGCTTGCAGATACTGTGACCTTAAAGAACTCCACAATTGCACTGGAAATTCATCTCAGCACTTTTTCAGACAGGGTTCTCTCGCCAGTAGTAAGCCAGCTTCTAATCCAAAATTTAGCAGCCGCTATCAGAAATCTAGGATTTTTCATCTCAGTGTC
CircID chr13:42303444|42303658
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MQKSCHLLQVKLADTVTLKNSTIALEIHLSTFSDRVLSPVVSQLLIQNLAAAIRNLGFFISVS
Nucleotide Sequence ATGCAGAAAAGTTGTCACCTCTTACAGGTCAAGCTTGCAGATACTGTGACCTTAAAGAACTCCACAATTGCACTGGAAATTCATCTCAGCACTTTTTCAGACAGGGTTCTCTCGCCAGTAGTAAGCCAGCTTCTAATCCAAAATTTAGCAGCCGCTATCAGAAATCTAGGATTTTTCATCTCAGTGTCC
CircID chr13:42303444|42303658
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MKNPRFLIAAAKFWIRSWLTTGERTLSEKVLR
Nucleotide Sequence ATGAAAAATCCTAGATTTCTGATAGCGGCTGCTAAATTTTGGATTAGAAGCTGGCTTACTACTGGCGAGAGAACCCTGTCTGAAAAAGTGCTGAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab