CircRNA Information

General Information
circRNA Basic Information
CircID chr13:45340724|45341077
Strand -
CircType exon
Host Gene ENSG00000133112.15;
Algorism CIRI2;
Sequence CTCCAGGCACAACCCGTCCGCGATCTCCCGGATCTTGTAGATGTCGGAGAACATCTCATCGTCTGCCGGATACACAGAGCCGCCCATCACCGTGCGCCTGGCGCCGCCATTTCCCGCATTTCCCGCGCCGGCGGCCGCACGCGGGATCTGCCCCTCCGTAGCACACCAGAGCTGGGCGCGAGCCCCGGGCACCGACCCCTCCGCGCTCGGCTAAGACCGCCGGCGTCCCCTAGGCCCGCGACGGCTGCGCCTTCCCCGCCCCCACCCGCACCCCAGACCCCCGTGTGCGGCAGTAAGGATAGTGCAGTGAGGACTCACGGCTGATGAGGTCCCGGTAGATAATCATGATGGCGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:45340724|45341077 hsa-miR-143-5p 0 0 1
chr13:45340724|45341077 hsa-miR-143-3p 0 0 1
chr13:45340724|45341077 hsa-miR-433-5p 0 0 1
chr13:45340724|45341077 hsa-miR-433-3p 0 0 1
chr13:45340724|45341077 hsa-miR-602 1 1 1
chr13:45340724|45341077 hsa-miR-608 1 0 1
chr13:45340724|45341077 hsa-miR-637 1 0 1
chr13:45340724|45341077 hsa-miR-661 1 0 1
chr13:45340724|45341077 hsa-miR-658 1 1 1
chr13:45340724|45341077 hsa-miR-675-5p 0 0 1
chr13:45340724|45341077 hsa-miR-675-3p 0 0 1
chr13:45340724|45341077 hsa-miR-760 1 1 1
chr13:45340724|45341077 hsa-miR-1250-5p 0 0 1
chr13:45340724|45341077 hsa-miR-1250-3p 0 0 1
chr13:45340724|45341077 hsa-miR-486-3p 0 0 1
chr13:45340724|45341077 hsa-miR-1283 0 0 1
chr13:45340724|45341077 hsa-miR-423-5p 0 1 1
chr13:45340724|45341077 hsa-miR-501-5p 0 0 1
chr13:45340724|45341077 hsa-miR-342-5p 0 0 1
chr13:45340724|45341077 hsa-miR-362-5p 0 0 1
chr13:45340724|45341077 hsa-miR-524-3p 0 0 1
chr13:45340724|45341077 hsa-miR-525-3p 0 0 1
chr13:45340724|45341077 hsa-miR-886-5p 0 0 1
chr13:45340724|45341077 hsa-miR-550 0 0 1
chr13:45340724|45341077 hsa-miR-1254 0 0 1
chr13:45340724|45341077 hsa-miR-886-3p 0 0 1
chr13:45340724|45341077 hsa-miR-663 0 0 1
chr13:45340724|45341077 hsa-miR-638 1 1 0
chr13:45340724|45341077 hsa-miR-663a 1 1 0
chr13:45340724|45341077 hsa-miR-762 1 0 0
chr13:45340724|45341077 hsa-miR-298 0 1 0
chr13:45340724|45341077 hsa-miR-1268a 1 0 0
chr13:45340724|45341077 hsa-miR-1469 1 1 0
chr13:45340724|45341077 hsa-miR-1471 1 1 0
chr13:45340724|45341077 hsa-miR-2861 1 0 0
chr13:45340724|45341077 hsa-miR-3181 1 0 0
chr13:45340724|45341077 hsa-miR-3196 0 1 0
chr13:45340724|45341077 hsa-miR-3197 1 0 0
chr13:45340724|45341077 hsa-miR-4267 0 1 0
chr13:45340724|45341077 hsa-miR-3621 1 0 0
chr13:45340724|45341077 hsa-miR-3665 1 0 0
chr13:45340724|45341077 hsa-miR-3713 0 1 0
chr13:45340724|45341077 hsa-miR-1268b 1 0 0
chr13:45340724|45341077 hsa-miR-4440 1 0 0
chr13:45340724|45341077 hsa-miR-4466 1 1 0
chr13:45340724|45341077 hsa-miR-4467 1 0 0
chr13:45340724|45341077 hsa-miR-4479 1 0 0
chr13:45340724|45341077 hsa-miR-4488 1 1 0
chr13:45340724|45341077 hsa-miR-3960 1 0 0
chr13:45340724|45341077 hsa-miR-4634 1 0 0
chr13:45340724|45341077 hsa-miR-4651 1 0 0
chr13:45340724|45341077 hsa-miR-4660 1 0 0
chr13:45340724|45341077 hsa-miR-4688 1 0 0
chr13:45340724|45341077 hsa-miR-4706 1 1 0
chr13:45340724|45341077 hsa-miR-4734 1 0 0
chr13:45340724|45341077 hsa-miR-4754 1 0 0
chr13:45340724|45341077 hsa-miR-4767 1 0 0
chr13:45340724|45341077 hsa-miR-5093 1 1 0
chr13:45340724|45341077 hsa-miR-5572 1 0 0
chr13:45340724|45341077 hsa-miR-5698 1 0 0
chr13:45340724|45341077 hsa-miR-5787 1 0 0
chr13:45340724|45341077 hsa-miR-6125 1 0 0
chr13:45340724|45341077 hsa-miR-8072 1 0 0
chr13:45340724|45341077 hsa-miR-8089 1 0 0
chr13:45340724|45341077 hsa-miR-12130 0 1 0
chr13:45340724|45341077 hsa-miR-4665-3p 1 0 0
chr13:45340724|45341077 hsa-miR-6747-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6089 1 0 0
chr13:45340724|45341077 hsa-miR-6880-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6746-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6741-5p 0 1 0
chr13:45340724|45341077 hsa-miR-7108-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6742-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6716-5p 0 1 0
chr13:45340724|45341077 hsa-miR-6871-5p 1 0 0
chr13:45340724|45341077 hsa-miR-3180-3p 1 1 0
chr13:45340724|45341077 hsa-miR-6772-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6732-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6805-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6798-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6782-5p 1 0 0
chr13:45340724|45341077 hsa-miR-5006-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6786-5p 1 0 0
chr13:45340724|45341077 hsa-miR-1229-5p 1 0 0
chr13:45340724|45341077 hsa-miR-1908-3p 1 1 0
chr13:45340724|45341077 hsa-miR-6784-5p 0 1 0
chr13:45340724|45341077 hsa-miR-4640-5p 1 0 0
chr13:45340724|45341077 hsa-miR-4691-3p 0 1 0
chr13:45340724|45341077 hsa-miR-1908-5p 1 1 0
chr13:45340724|45341077 hsa-miR-1228-5p 1 1 0
chr13:45340724|45341077 hsa-miR-4783-5p 1 1 0
chr13:45340724|45341077 hsa-miR-4717-3p 1 1 0
chr13:45340724|45341077 hsa-miR-6749-5p 1 1 0
chr13:45340724|45341077 hsa-miR-4787-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6824-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6789-5p 1 0 0
chr13:45340724|45341077 hsa-miR-7156-3p 1 0 0
chr13:45340724|45341077 hsa-miR-664b-5p 1 0 0
chr13:45340724|45341077 hsa-miR-3191-3p 0 1 0
chr13:45340724|45341077 hsa-miR-4707-5p 1 0 0
chr13:45340724|45341077 hsa-miR-744-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6869-3p 1 0 0
chr13:45340724|45341077 hsa-miR-6837-3p 1 0 0
chr13:45340724|45341077 hsa-miR-6770-3p 0 1 0
chr13:45340724|45341077 hsa-miR-1292-3p 0 1 0
chr13:45340724|45341077 hsa-miR-2277-5p 1 1 0
chr13:45340724|45341077 hsa-miR-3124-5p 0 1 0
chr13:45340724|45341077 hsa-miR-10400-5p 1 1 0
chr13:45340724|45341077 hsa-miR-1207-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6769b-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6787-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6812-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6816-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6775-5p 1 0 0
chr13:45340724|45341077 hsa-miR-1343-5p 1 0 0
chr13:45340724|45341077 hsa-miR-3180 0 1 0
chr13:45340724|45341077 hsa-miR-6743-5p 0 1 0
chr13:45340724|45341077 hsa-miR-6752-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6756-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6803-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6815-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6819-5p 1 0 0
chr13:45340724|45341077 hsa-miR-7107-5p 1 0 0
chr13:45340724|45341077 hsa-miR-7110-5p 1 0 0
chr13:45340724|45341077 hsa-miR-10401-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6722-3p 1 0 0
chr13:45340724|45341077 hsa-miR-6751-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6779-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6797-5p 1 0 0
chr13:45340724|45341077 hsa-miR-7111-5p 1 0 0
chr13:45340724|45341077 hsa-miR-4728-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6780b-5p 1 1 0
chr13:45340724|45341077 hsa-miR-10396a-5p 1 0 0
chr13:45340724|45341077 hsa-miR-10396b-5p 1 1 0
chr13:45340724|45341077 hsa-miR-1237-5p 1 1 0
chr13:45340724|45341077 hsa-miR-328-5p 0 1 0
chr13:45340724|45341077 hsa-miR-4725-3p 1 1 0
chr13:45340724|45341077 hsa-miR-4749-5p 1 1 0
chr13:45340724|45341077 hsa-miR-6729-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6738-5p 0 1 0
chr13:45340724|45341077 hsa-miR-6846-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6848-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6858-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6889-5p 1 0 0
chr13:45340724|45341077 hsa-miR-4758-5p 1 0 0
chr13:45340724|45341077 hsa-miR-3940-5p 1 0 0
chr13:45340724|45341077 hsa-miR-1914-3p 0 1 0
chr13:45340724|45341077 hsa-miR-4665-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6855-5p 1 0 0
chr13:45340724|45341077 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr13:45340724|45341077
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MPLRSTPELGASPGHRPLRARLRPPASPRPATAAPSPPPPAPQTPVCGSKDSAVRTHG
Nucleotide Sequence CTGCCCCTCCGTAGCACACCAGAGCTGGGCGCGAGCCCCGGGCACCGACCCCTCCGCGCTCGGCTAAGACCGCCGGCGTCCCCTAGGCCCGCGACGGCTGCGCCTTCCCCGCCCCCACCCGCACCCCAGACCCCCGTGTGCGGCAGTAAGGATAGTGCAGTGAGGACTCACGGCTGA

CircID chr13:45340724|45341077
ORF Type ORF2
Protein Length 57
Nucleotide Length 174
Protein Sequence MSENISSSAGYTEPPITVRLAPPFPAFPAPAAARGICPSVAHQSWARAPGTDPSALG
Nucleotide Sequence ATGTCGGAGAACATCTCATCGTCTGCCGGATACACAGAGCCGCCCATCACCGTGCGCCTGGCGCCGCCATTTCCCGCATTTCCCGCGCCGGCGGCCGCACGCGGGATCTGCCCCTCCGTAGCACACCAGAGCTGGGCGCGAGCCCCGGGCACCGACCCCTCCGCGCTCGGCTAA

CircID chr13:45340724|45341077
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MPDTQSRPSPCAWRRHFPHFPRRRPHAGSAPP
Nucleotide Sequence CTGCCGGATACACAGAGCCGCCCATCACCGTGCGCCTGGCGCCGCCATTTCCCGCATTTCCCGCGCCGGCGGCCGCACGCGGGATCTGCCCCTCCGTAG

CircID chr13:45340724|45341077
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MGGSVYPADDEMFSDIYKIREIADGLCLE
Nucleotide Sequence ATGGGCGGCTCTGTGTATCCGGCAGACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGGAG

CircID chr13:45340724|45341077
ORF Type ORF5
Protein Length 68
Nucleotide Length 207
Protein Sequence MPHTGVWGAGGGGEGAAVAGLGDAGGLSRARRGRCPGLAPSSGVLRRGRSRVRPPAREMREMAAPGAR
Nucleotide Sequence CTGCCGCACACGGGGGTCTGGGGTGCGGGTGGGGGCGGGGAAGGCGCAGCCGTCGCGGGCCTAGGGGACGCCGGCGGTCTTAGCCGAGCGCGGAGGGGTCGGTGCCCGGGGCTCGCGCCCAGCTCTGGTGTGCTACGGAGGGGCAGATCCCGCGTGCGGCCGCCGGCGCGGGAAATGCGGGAAATGGCGGCGCCAGGCGCACGGTGA

CircID chr13:45340724|45341077
ORF Type ORF6
Protein Length 25
Nucleotide Length 75
Protein Sequence MCIRQTMRCSPTSTRSGRSRTGCAW
Nucleotide Sequence CTGTGTATCCGGCAGACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGG

CircID chr13:45340724|45341077
ORF Type ORF7
Protein Length 38
Nucleotide Length 117
Protein Sequence MIIYRDLISRESSLHYPYCRTRGSGVRVGAGKAQPSRA
Nucleotide Sequence ATGATTATCTACCGGGACCTCATCAGCCGTGAGTCCTCACTGCACTATCCTTACTGCCGCACACGGGGGTCTGGGGTGCGGGTGGGGGCGGGGAAGGCGCAGCCGTCGCGGGCCTAG

CircID chr13:45340724|45341077
ORF Type ORF8
Protein Length 37
Nucleotide Length 114
Protein Sequence MVCYGGADPACGRRRGKCGKWRRQAHGDGRLCVSGRR
Nucleotide Sequence CTGGTGTGCTACGGAGGGGCAGATCCCGCGTGCGGCCGCCGGCGCGGGAAATGCGGGAAATGGCGGCGCCAGGCGCACGGTGATGGGCGGCTCTGTGTATCCGGCAGACGATGA

CircID chr13:45340724|45341077
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MIIYRDLISHDEMFSDIYKIREIADGLCLE
Nucleotide Sequence ATGATTATCTACCGGGACCTCATCAGCCACGATGAGATGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGTTGTGCCTGGAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites