CircRNA Information

General Information
circRNA Basic Information
CircID chr13:49075289|49114731
Strand +
CircType exon
Host Gene ENSG00000102531.16;
Algorism find_circ;CIRI2;CIRC
Sequence GTTATTCTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAGGTCCTGCTCAGGTTCCAATGATGTCCCCAAATGGTTCTGTGCCTCCTATCTATGTGCCTCCTGGATATGCCCCACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:49075289|49114731 hsa-miR-148a-5p 0 0 1
chr13:49075289|49114731 hsa-miR-148a-3p 0 0 1
chr13:49075289|49114731 hsa-miR-152-5p 0 0 1
chr13:49075289|49114731 hsa-miR-152-3p 0 0 1
chr13:49075289|49114731 hsa-miR-370-5p 0 0 1
chr13:49075289|49114731 hsa-miR-370-3p 0 0 1
chr13:49075289|49114731 hsa-miR-148b-5p 0 0 1
chr13:49075289|49114731 hsa-miR-148b-3p 0 0 1
chr13:49075289|49114731 hsa-miR-522-5p 0 0 1
chr13:49075289|49114731 hsa-miR-522-3p 0 0 1
chr13:49075289|49114731 hsa-miR-552-5p 0 0 1
chr13:49075289|49114731 hsa-miR-552-3p 0 0 1
chr13:49075289|49114731 hsa-miR-665 0 0 1
chr13:49075289|49114731 hsa-miR-1253 0 0 1
chr13:49075289|49114731 hsa-miR-134-3p 0 1 1
chr13:49075289|49114731 hsa-miR-767-3p 0 1 1
chr13:49075289|49114731 hsa-miR-338-5p 0 0 1
chr13:49075289|49114731 hsa-miR-455-5p 0 1 1
chr13:49075289|49114731 hsa-miR-550 0 0 1
chr13:49075289|49114731 hsa-miR-711 1 0 0
chr13:49075289|49114731 hsa-miR-4313 1 0 0
chr13:49075289|49114731 hsa-miR-4426 0 1 0
chr13:49075289|49114731 hsa-miR-7515 0 1 0
chr13:49075289|49114731 hsa-miR-150-3p 1 1 0
chr13:49075289|49114731 hsa-miR-6836-3p 1 0 0
chr13:49075289|49114731 hsa-miR-218-2-3p 0 1 0
chr13:49075289|49114731 hsa-miR-6760-5p 1 0 0
chr13:49075289|49114731 hsa-miR-3934-3p 0 1 0
chr13:49075289|49114731 hsa-miR-6826-5p 1 1 0
chr13:49075289|49114731 hsa-miR-6889-3p 0 1 0
chr13:49075289|49114731 hsa-miR-6778-3p 1 0 0
chr13:49075289|49114731 hsa-miR-6780b-5p 1 0 0
chr13:49075289|49114731 hsa-miR-1271-3p 1 0 0
chr13:49075289|49114731 hsa-miR-6791-3p 1 1 0
chr13:49075289|49114731 hsa-miR-6829-3p 1 1 0
chr13:49075289|49114731 hsa-miR-6529-3p 0 1 0
chr13:49075289|49114731 hsa-miR-10394-5p 1 0 0
chr13:49075289|49114731 hsa-miR-6781-3p 0 1 0
chr13:49075289|49114731 hsa-miR-10399-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:49075289|49114731
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LWGISRRHIDRRHRTIWGHHWNLSRTCNALKLSIFSSYCKCFSWVNLYQNN
Nucleotide Sequence CTGTGGGGCATATCCAGGAGGCACATAGATAGGAGGCACAGAACCATTTGGGGACATCATTGGAACCTGAGCAGGACCTGTAATGCACTGAAACTGTCCATCTTCTCTTCTTATTGTAAATGCTTCTCCTGGGTTAACTTGTACCAGAATAAC
CircID chr13:49075289|49114731
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MVQVNPGEAFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQ
Nucleotide Sequence CTGGTACAAGTTAACCCAGGAGAAGCATTTACAATAAGAAGAGAAGATGGACAGTTTCAGTGCATTACAGGTCCTGCTCAGGTTCCAATGATGTCCCCAAATGGTTCTGTGCCTCCTATCTATGTGCCTCCTGGATATGCCCCACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr13:49075289|49114731 RBM6 0 1 0
chr13:49075289|49114731 U2AF2 11 7 0
chr13:49075289|49114731 ELAVL1 4 1 1
chr13:49075289|49114731 UPF1 0 1 0
chr13:49075289|49114731 TAF15 2 2 0
chr13:49075289|49114731 CPSF7 0 2 0
chr13:49075289|49114731 FUS 0 1 0
chr13:49075289|49114731 NOP58 1 0 1
chr13:49075289|49114731 NOP56 1 1 0
chr13:49075289|49114731 FIP1L1 0 0 1
chr13:49075289|49114731 PTBP1 0 2 0
chr13:49075289|49114731 HNRNPC 0 14 5
chr13:49075289|49114731 ACIN1 2 0 2
chr13:49075289|49114731 SMNDC1 0 1 0
chr13:49075289|49114731 HNRNPA1 0 3 0
chr13:49075289|49114731 SND1 0 0 1
chr13:49075289|49114731 IGF2BP1 0 1 0
chr13:49075289|49114731 IGF2BP3 0 0 1
chr13:49075289|49114731 TARDBP 1 0 0
chr13:49075289|49114731 STAU1 0 1 0
chr13:49075289|49114731 BUD13 0 0 1
chr13:49075289|49114731 RBFOX2 1 1 0
chr13:49075289|49114731 CSTF2T 0 1 0
chr13:49075289|49114731 CSTF2 0 1 0
chr13:49075289|49114731 TIAL1 0 1 0
chr13:49075289|49114731 EIF4A3 5 5 4
chr13:49075289|49114731 AGO2 1 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab