CircRNA Information

General Information
circRNA Basic Information
CircID chr13:51760076|51760283
Strand -
CircType exon
Host Gene ENSG00000139668.8;
Algorism CIRI2;
Sequence TTTTCAACACCCCATTTTACTTGTTGCTTTGTCAGAGAAATAAGGGAGGTATCTACTCAGAGTATTTTGGTCATTATACTTTCTGTGTTTACTTCAACATGTGTCACGTGGCCAGCGGCTTTTTCTTCTCTTCCCTCTGCACCTACCTGCACCTTCTCTGCCTTTCCTGGAGGGGATGTATTTATGTTATTTATTCCCAGTGTTTCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:51760076|51760283 hsa-miR-18a-5p 0 0 1
chr13:51760076|51760283 hsa-miR-18a-3p 0 0 1
chr13:51760076|51760283 hsa-miR-30a-5p 0 0 1
chr13:51760076|51760283 hsa-miR-30a-3p 0 0 1
chr13:51760076|51760283 hsa-miR-30d-5p 0 0 1
chr13:51760076|51760283 hsa-miR-30d-3p 0 0 1
chr13:51760076|51760283 hsa-miR-30b-5p 0 0 1
chr13:51760076|51760283 hsa-miR-30b-3p 0 0 1
chr13:51760076|51760283 hsa-miR-141-5p 0 0 1
chr13:51760076|51760283 hsa-miR-141-3p 0 0 1
chr13:51760076|51760283 hsa-miR-200a-5p 0 0 1
chr13:51760076|51760283 hsa-miR-200a-3p 0 0 1
chr13:51760076|51760283 hsa-miR-30e-5p 0 0 1
chr13:51760076|51760283 hsa-miR-30e-3p 0 0 1
chr13:51760076|51760283 hsa-miR-18b-5p 0 0 1
chr13:51760076|51760283 hsa-miR-18b-3p 0 0 1
chr13:51760076|51760283 hsa-miR-573 0 0 1
chr13:51760076|51760283 hsa-miR-588 0 0 1
chr13:51760076|51760283 hsa-miR-608 0 0 1
chr13:51760076|51760283 hsa-miR-609 0 0 1
chr13:51760076|51760283 hsa-miR-653-5p 0 0 1
chr13:51760076|51760283 hsa-miR-653-3p 0 0 1
chr13:51760076|51760283 hsa-miR-657 0 0 1
chr13:51760076|51760283 hsa-miR-665 0 0 1
chr13:51760076|51760283 hsa-miR-548l 0 0 1
chr13:51760076|51760283 hsa-miR-1253 0 0 1
chr13:51760076|51760283 hsa-miR-330-3p 0 0 1
chr13:51760076|51760283 hsa-miR-875-5p 0 0 1
chr13:51760076|51760283 hsa-miR-342-5p 0 0 1
chr13:51760076|51760283 hsa-miR-30c 0 0 1
chr13:51760076|51760283 hsa-miR-198 1 0 0
chr13:51760076|51760283 hsa-miR-658 1 0 0
chr13:51760076|51760283 hsa-miR-765 1 0 0
chr13:51760076|51760283 hsa-miR-3132 1 0 0
chr13:51760076|51760283 hsa-miR-3154 1 0 0
chr13:51760076|51760283 hsa-miR-3165 1 0 0
chr13:51760076|51760283 hsa-miR-3175 1 0 0
chr13:51760076|51760283 hsa-miR-3197 1 0 0
chr13:51760076|51760283 hsa-miR-4270 1 0 0
chr13:51760076|51760283 hsa-miR-3621 1 0 0
chr13:51760076|51760283 hsa-miR-3665 1 0 0
chr13:51760076|51760283 hsa-miR-4436a 1 0 0
chr13:51760076|51760283 hsa-miR-4458 1 0 0
chr13:51760076|51760283 hsa-miR-4466 1 0 0
chr13:51760076|51760283 hsa-miR-2392 1 0 0
chr13:51760076|51760283 hsa-miR-4516 1 0 0
chr13:51760076|51760283 hsa-miR-4525 1 0 0
chr13:51760076|51760283 hsa-miR-4656 1 0 0
chr13:51760076|51760283 hsa-miR-4688 1 0 0
chr13:51760076|51760283 hsa-miR-4706 1 0 0
chr13:51760076|51760283 hsa-miR-4739 1 0 0
chr13:51760076|51760283 hsa-miR-6124 1 0 0
chr13:51760076|51760283 hsa-miR-6125 1 0 0
chr13:51760076|51760283 hsa-miR-6133 1 0 0
chr13:51760076|51760283 hsa-miR-7150 1 0 0
chr13:51760076|51760283 hsa-miR-8072 1 0 0
chr13:51760076|51760283 hsa-miR-8085 1 0 0
chr13:51760076|51760283 hsa-miR-8089 1 0 0
chr13:51760076|51760283 hsa-miR-12114 1 0 0
chr13:51760076|51760283 hsa-miR-12124 1 0 0
chr13:51760076|51760283 hsa-miR-3150a-3p 1 0 0
chr13:51760076|51760283 hsa-miR-7106-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6825-5p 1 0 0
chr13:51760076|51760283 hsa-miR-25-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6799-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6510-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6804-5p 1 0 0
chr13:51760076|51760283 hsa-miR-3622a-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6880-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4722-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6730-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6741-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4655-5p 1 0 0
chr13:51760076|51760283 hsa-miR-197-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6776-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6716-5p 1 0 0
chr13:51760076|51760283 hsa-miR-3180-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6748-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6798-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6770-5p 1 0 0
chr13:51760076|51760283 hsa-miR-2467-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6835-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6757-3p 1 0 0
chr13:51760076|51760283 hsa-miR-4732-5p 1 0 0
chr13:51760076|51760283 hsa-miR-324-5p 1 0 0
chr13:51760076|51760283 hsa-miR-149-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6824-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6800-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6802-5p 1 0 0
chr13:51760076|51760283 hsa-miR-3158-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6509-5p 1 0 0
chr13:51760076|51760283 hsa-miR-1207-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4763-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6769b-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6893-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6743-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6769a-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6851-5p 1 0 0
chr13:51760076|51760283 hsa-miR-11181-3p 1 0 0
chr13:51760076|51760283 hsa-miR-1249-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6722-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6797-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6808-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6879-5p 1 0 0
chr13:51760076|51760283 hsa-miR-5196-5p 1 0 0
chr13:51760076|51760283 hsa-miR-10526-3p 1 0 0
chr13:51760076|51760283 hsa-miR-1909-3p 1 0 0
chr13:51760076|51760283 hsa-miR-4632-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6735-5p 1 0 0
chr13:51760076|51760283 hsa-miR-675-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6777-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6858-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4436b-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6831-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6511a-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6511b-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6758-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6856-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4646-5p 1 0 0
chr13:51760076|51760283 hsa-miR-4747-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6750-5p 1 0 0
chr13:51760076|51760283 hsa-miR-518e-5p 1 0 0
chr13:51760076|51760283 hsa-miR-519a-5p 1 0 0
chr13:51760076|51760283 hsa-miR-519b-5p 1 0 0
chr13:51760076|51760283 hsa-miR-519c-5p 1 0 0
chr13:51760076|51760283 hsa-miR-522-5p 1 0 0
chr13:51760076|51760283 hsa-miR-523-5p 1 0 0
chr13:51760076|51760283 hsa-miR-5581-5p 1 0 0
chr13:51760076|51760283 hsa-miR-6884-5p 1 0 0
chr13:51760076|51760283 hsa-miR-10394-5p 1 0 0
chr13:51760076|51760283 hsa-miR-3059-3p 1 0 0
chr13:51760076|51760283 hsa-miR-6806-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:51760076|51760283
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MVIILSVFTSTCVTWPAAFSSLPSAPTCTFSAFPGGDVFMLFIPSVS
Nucleotide Sequence TTGGTCATTATACTTTCTGTGTTTACTTCAACATGTGTCACGTGGCCAGCGGCTTTTTCTTCTCTTCCCTCTGCACCTACCTGCACCTTCTCTGCCTTTCCTGGAGGGGATGTATTTATGTTATTTATTCCCAGTGTTTCT
CircID chr13:51760076|51760283
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MCLLQHVSRGQRLFLLFPLHLPAPSLPFLEGMYLCYLFPVFL
Nucleotide Sequence CTGTGTTTACTTCAACATGTGTCACGTGGCCAGCGGCTTTTTCTTCTCTTCCCTCTGCACCTACCTGCACCTTCTCTGCCTTTCCTGGAGGGGATGTATTTATGTTATTTATTCCCAGTGTTTCTG
CircID chr13:51760076|51760283
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MLLCQRNKGGIYSEYFGHYTFCVYFNMCHVASGFFFSSLCTYLHLLCLSWRGCIYVIYSQCF
Nucleotide Sequence TTGTTGCTTTGTCAGAGAAATAAGGGAGGTATCTACTCAGAGTATTTTGGTCATTATACTTTCTGTGTTTACTTCAACATGTGTCACGTGGCCAGCGGCTTTTTCTTCTCTTCCCTCTGCACCTACCTGCACCTTCTCTGCCTTTCCTGGAGGGGATGTATTTATGTTATTTATTCCCAGTGTTTC
CircID chr13:51760076|51760283
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MGINNINTSPPGKAEKVQVGAEGREEKAAGHVTHVEVNTESIMTKIL
Nucleotide Sequence CTGGGAATAAATAACATAAATACATCCCCTCCAGGAAAGGCAGAGAAGGTGCAGGTAGGTGCAGAGGGAAGAGAAGAAAAAGCCGCTGGCCACGTGACACATGTTGAAGTAAACACAGAAAGTATAATGACCAAAATACTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab