CircRNA Information

General Information
circRNA Basic Information
CircID chr13:53041936|53042122
Strand +
CircType exon
Host Gene ENSG00000102837.6;
Algorism CIRI2;
Sequence CTCCACCTCCAGCTGGTCAACAATTTCTGAGCTTCCACCAAAACTCTCCTTCAGCTGTATGACCAGTTTTTCCATCTCCTTCACTTCTACCTTGATCAGCTCGAAGTCCAGTTCAGTGTAAGAAATGGTATCCTTCTCCATGATGTCAATTCGGACAGTTAGGTTTAACAGTTTCTTTTCATACACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:53041936|53042122 hsa-miR-422a 1 1 1
chr13:53041936|53042122 hsa-miR-489-5p 0 0 1
chr13:53041936|53042122 hsa-miR-489-3p 0 0 1
chr13:53041936|53042122 hsa-miR-600 0 0 1
chr13:53041936|53042122 hsa-miR-653-5p 0 0 1
chr13:53041936|53042122 hsa-miR-653-3p 0 0 1
chr13:53041936|53042122 hsa-miR-548e-5p 0 0 1
chr13:53041936|53042122 hsa-miR-548e-3p 0 0 1
chr13:53041936|53042122 hsa-miR-548g-5p 0 0 1
chr13:53041936|53042122 hsa-miR-548g-3p 0 0 1
chr13:53041936|53042122 hsa-miR-1252-5p 0 0 1
chr13:53041936|53042122 hsa-miR-1252-3p 0 0 1
chr13:53041936|53042122 hsa-miR-671-5p 0 0 1
chr13:53041936|53042122 hsa-miR-490-5p 0 0 1
chr13:53041936|53042122 hsa-miR-1207-3p 0 0 1
chr13:53041936|53042122 hsa-miR-485-3p 0 0 1
chr13:53041936|53042122 hsa-miR-582-3p 0 1 1
chr13:53041936|53042122 hsa-miR-548a-3p 0 0 1
chr13:53041936|53042122 hsa-miR-378 0 0 1
chr13:53041936|53042122 hsa-miR-548f 0 0 1
chr13:53041936|53042122 hsa-miR-765 1 0 0
chr13:53041936|53042122 hsa-miR-3132 1 0 0
chr13:53041936|53042122 hsa-miR-378b 0 1 0
chr13:53041936|53042122 hsa-miR-3148 0 1 0
chr13:53041936|53042122 hsa-miR-3154 1 0 0
chr13:53041936|53042122 hsa-miR-378c 1 1 0
chr13:53041936|53042122 hsa-miR-3652 0 1 0
chr13:53041936|53042122 hsa-miR-3654 0 1 0
chr13:53041936|53042122 hsa-miR-378e 1 1 0
chr13:53041936|53042122 hsa-miR-378f 1 1 0
chr13:53041936|53042122 hsa-miR-378g 1 0 0
chr13:53041936|53042122 hsa-miR-4428 1 1 0
chr13:53041936|53042122 hsa-miR-4458 1 0 0
chr13:53041936|53042122 hsa-miR-378h 0 1 0
chr13:53041936|53042122 hsa-miR-3135b 1 0 0
chr13:53041936|53042122 hsa-miR-4510 1 0 0
chr13:53041936|53042122 hsa-miR-4515 1 1 0
chr13:53041936|53042122 hsa-miR-4516 0 1 0
chr13:53041936|53042122 hsa-miR-4531 0 1 0
chr13:53041936|53042122 hsa-miR-4533 1 0 0
chr13:53041936|53042122 hsa-miR-378i 0 1 0
chr13:53041936|53042122 hsa-miR-4539 1 1 0
chr13:53041936|53042122 hsa-miR-4689 1 0 0
chr13:53041936|53042122 hsa-miR-4739 1 0 0
chr13:53041936|53042122 hsa-miR-4784 1 0 0
chr13:53041936|53042122 hsa-miR-5192 1 0 0
chr13:53041936|53042122 hsa-miR-6079 1 0 0
chr13:53041936|53042122 hsa-miR-6127 1 0 0
chr13:53041936|53042122 hsa-miR-6131 1 0 0
chr13:53041936|53042122 hsa-miR-8058 0 1 0
chr13:53041936|53042122 hsa-miR-12114 1 0 0
chr13:53041936|53042122 hsa-miR-12115 1 0 0
chr13:53041936|53042122 hsa-miR-4433b-3p 1 0 0
chr13:53041936|53042122 hsa-miR-4433a-3p 1 0 0
chr13:53041936|53042122 hsa-miR-7106-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6825-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6854-5p 0 1 0
chr13:53041936|53042122 hsa-miR-8071 1 0 0
chr13:53041936|53042122 hsa-miR-6833-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6515-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6880-5p 1 0 0
chr13:53041936|53042122 hsa-miR-7847-3p 1 0 0
chr13:53041936|53042122 hsa-miR-144-5p 0 1 0
chr13:53041936|53042122 hsa-miR-197-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6871-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6770-5p 0 1 0
chr13:53041936|53042122 hsa-miR-6760-5p 1 1 0
chr13:53041936|53042122 hsa-miR-6514-5p 1 0 0
chr13:53041936|53042122 hsa-miR-4738-3p 0 1 0
chr13:53041936|53042122 hsa-miR-4650-3p 0 1 0
chr13:53041936|53042122 hsa-miR-7854-3p 1 0 0
chr13:53041936|53042122 hsa-miR-2681-3p 0 1 0
chr13:53041936|53042122 hsa-miR-6824-5p 1 0 0
chr13:53041936|53042122 hsa-let-7g-5p 1 0 0
chr13:53041936|53042122 hsa-miR-4724-5p 0 1 0
chr13:53041936|53042122 hsa-let-7c-5p 1 0 0
chr13:53041936|53042122 hsa-let-7e-5p 1 0 0
chr13:53041936|53042122 hsa-let-7a-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6726-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6851-5p 1 1 0
chr13:53041936|53042122 hsa-miR-6763-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6797-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6777-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6889-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6831-5p 1 1 0
chr13:53041936|53042122 hsa-miR-939-5p 1 0 0
chr13:53041936|53042122 hsa-miR-6511a-5p 1 0 0
chr13:53041936|53042122 hsa-miR-3679-5p 1 0 0
chr13:53041936|53042122 hsa-miR-378a-3p 1 1 0
chr13:53041936|53042122 hsa-miR-6766-5p 1 0 0
chr13:53041936|53042122 hsa-miR-5009-5p 0 1 0
chr13:53041936|53042122 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:53041936|53042122
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MYDQFFHLLHFYLDQLEVQFSVRNGILLHDVNSDS
Nucleotide Sequence CTGTATGACCAGTTTTTCCATCTCCTTCACTTCTACCTTGATCAGCTCGAAGTCCAGTTCAGTGTAAGAAATGGTATCCTTCTCCATGATGTCAATTCGGACAGTTAG
CircID chr13:53041936|53042122
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MLNLTVRIDIMEKDTISYTELDFELIKVEVKEMEKLVIQLKESFGGSSEIVDQLEVE
Nucleotide Sequence CTGTTAAACCTAACTGTCCGAATTGACATCATGGAGAAGGATACCATTTCTTACACTGAACTGGACTTCGAGCTGATCAAGGTAGAAGTGAAGGAGATGGAAAAACTGGTCATACAGCTGAAGGAGAGTTTTGGTGGAAGCTCAGAAATTGTTGACCAGCTGGAGGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab