CircRNA Information

General Information
circRNA Basic Information
CircID chr13:53050307|53050442
Strand -
CircType exon
Host Gene ENSG00000102837.6;
Algorism CIRI2;
Sequence ACGATTGCTGTGACTCAAACTCTCCCTAATGCTGCCTATAATAACCGCTTTTCATATGCTAATGTTGCTTGGCAAGATATTGACTTTGCTGTGGATGAGAATGGATTGTGGGTTATTTATTCAACTGAAGCCAGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:53050307|53050442 hsa-miR-107 1 0 1
chr13:53050307|53050442 hsa-miR-545-5p 0 0 1
chr13:53050307|53050442 hsa-miR-545-3p 0 0 1
chr13:53050307|53050442 hsa-miR-627-5p 0 0 1
chr13:53050307|53050442 hsa-miR-627-3p 0 0 1
chr13:53050307|53050442 hsa-miR-940 0 0 1
chr13:53050307|53050442 hsa-miR-1321 0 0 1
chr13:53050307|53050442 hsa-miR-103 0 0 1
chr13:53050307|53050442 hsa-miR-1183 1 0 0
chr13:53050307|53050442 hsa-miR-3175 1 0 0
chr13:53050307|53050442 hsa-miR-3937 1 0 0
chr13:53050307|53050442 hsa-miR-4688 1 0 0
chr13:53050307|53050442 hsa-miR-4739 1 0 0
chr13:53050307|53050442 hsa-miR-5698 1 0 0
chr13:53050307|53050442 hsa-miR-6860 1 0 0
chr13:53050307|53050442 hsa-miR-138-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6825-5p 1 0 0
chr13:53050307|53050442 hsa-miR-4695-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6806-5p 1 0 0
chr13:53050307|53050442 hsa-miR-7845-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6760-5p 1 0 0
chr13:53050307|53050442 hsa-miR-4693-3p 1 0 0
chr13:53050307|53050442 hsa-miR-885-3p 1 0 0
chr13:53050307|53050442 hsa-miR-6824-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6812-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6870-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6893-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6779-5p 1 0 0
chr13:53050307|53050442 hsa-miR-4728-5p 1 0 0
chr13:53050307|53050442 hsa-miR-4632-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6777-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6883-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6889-5p 1 0 0
chr13:53050307|53050442 hsa-miR-3187-5p 1 0 0
chr13:53050307|53050442 hsa-miR-4723-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6831-5p 1 0 0
chr13:53050307|53050442 hsa-miR-34b-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6511a-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6511b-5p 1 0 0
chr13:53050307|53050442 hsa-miR-30c-1-3p 1 0 0
chr13:53050307|53050442 hsa-miR-6731-5p 1 0 0
chr13:53050307|53050442 hsa-miR-6785-5p 1 0 0
chr13:53050307|53050442 hsa-miR-9851-5p 1 0 0
chr13:53050307|53050442 hsa-miR-549a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:53050307|53050442
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MLPIITAFHMLMLLGKILTLLWMRMDCGLFIQLKPA
Nucleotide Sequence ATGCTGCCTATAATAACCGCTTTTCATATGCTAATGTTGCTTGGCAAGATATTGACTTTGCTGTGGATGAGAATGGATTGTGGGTTATTTATTCAACTGAAGCCAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab