CircRNA Information

General Information
circRNA Basic Information
CircID chr13:75841836|75841974
Strand +
CircType exon
Host Gene ENSG00000136153.18;
Algorism CIRI2;
Sequence TGGTATATTCTGACTGATGTTTCCCGCTCTATCTCTGCCTGGCGCTTCTGCTCCTCCGCAGGACGCTTCTGCTCCTCAGCCTCAGCCTGAAGCCGCTTTTGCTCTTGCTCTTCCTGAAGCTGTTGCTCCCATTTCCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:75841836|75841974 hsa-miR-335-5p 0 0 1
chr13:75841836|75841974 hsa-miR-335-3p 0 0 1
chr13:75841836|75841974 hsa-miR-484 0 0 1
chr13:75841836|75841974 hsa-miR-494-5p 0 0 1
chr13:75841836|75841974 hsa-miR-494-3p 0 0 1
chr13:75841836|75841974 hsa-miR-658 1 1 1
chr13:75841836|75841974 hsa-miR-765 0 1 1
chr13:75841836|75841974 hsa-miR-298 0 1 1
chr13:75841836|75841974 hsa-miR-873-5p 0 0 1
chr13:75841836|75841974 hsa-miR-873-3p 0 0 1
chr13:75841836|75841974 hsa-miR-920 0 0 1
chr13:75841836|75841974 hsa-miR-548p 0 0 1
chr13:75841836|75841974 hsa-miR-485-5p 0 0 1
chr13:75841836|75841974 hsa-miR-3125 0 1 0
chr13:75841836|75841974 hsa-miR-3195 1 0 0
chr13:75841836|75841974 hsa-miR-3197 1 0 0
chr13:75841836|75841974 hsa-miR-3665 1 0 0
chr13:75841836|75841974 hsa-miR-3929 0 1 0
chr13:75841836|75841974 hsa-miR-3937 1 0 0
chr13:75841836|75841974 hsa-miR-3945 1 0 0
chr13:75841836|75841974 hsa-miR-4478 1 1 0
chr13:75841836|75841974 hsa-miR-4514 1 1 0
chr13:75841836|75841974 hsa-miR-4656 1 1 0
chr13:75841836|75841974 hsa-miR-4673 1 1 0
chr13:75841836|75841974 hsa-miR-4692 1 0 0
chr13:75841836|75841974 hsa-miR-5090 1 0 0
chr13:75841836|75841974 hsa-miR-5093 0 1 0
chr13:75841836|75841974 hsa-miR-5698 1 0 0
chr13:75841836|75841974 hsa-miR-5739 1 0 0
chr13:75841836|75841974 hsa-miR-5787 1 0 0
chr13:75841836|75841974 hsa-miR-6081 1 1 0
chr13:75841836|75841974 hsa-miR-6088 1 0 0
chr13:75841836|75841974 hsa-miR-6090 1 0 0
chr13:75841836|75841974 hsa-miR-8072 1 0 0
chr13:75841836|75841974 hsa-miR-8073 1 0 0
chr13:75841836|75841974 hsa-miR-8082 1 1 0
chr13:75841836|75841974 hsa-miR-12128 1 0 0
chr13:75841836|75841974 hsa-miR-6894-5p 1 0 0
chr13:75841836|75841974 hsa-miR-25-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4722-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4755-3p 1 0 0
chr13:75841836|75841974 hsa-miR-3928-3p 1 0 0
chr13:75841836|75841974 hsa-miR-6727-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6716-5p 1 1 0
chr13:75841836|75841974 hsa-miR-6793-5p 1 0 0
chr13:75841836|75841974 hsa-miR-3126-5p 1 0 0
chr13:75841836|75841974 hsa-miR-2467-3p 1 0 0
chr13:75841836|75841974 hsa-miR-6874-5p 1 0 0
chr13:75841836|75841974 hsa-miR-5006-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6853-5p 1 0 0
chr13:75841836|75841974 hsa-miR-542-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4640-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4690-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4732-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6895-5p 1 0 0
chr13:75841836|75841974 hsa-miR-423-5p 1 1 0
chr13:75841836|75841974 hsa-miR-4727-3p 1 0 0
chr13:75841836|75841974 hsa-miR-1207-5p 1 0 0
chr13:75841836|75841974 hsa-miR-1233-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4763-3p 1 0 0
chr13:75841836|75841974 hsa-miR-6778-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6870-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6893-5p 1 1 0
chr13:75841836|75841974 hsa-miR-1343-5p 1 0 0
chr13:75841836|75841974 hsa-miR-5001-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6726-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6743-5p 0 1 0
chr13:75841836|75841974 hsa-miR-6756-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6803-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6813-5p 1 0 0
chr13:75841836|75841974 hsa-miR-11181-3p 1 0 0
chr13:75841836|75841974 hsa-miR-6808-5p 1 0 0
chr13:75841836|75841974 hsa-miR-7111-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4728-5p 1 0 0
chr13:75841836|75841974 hsa-miR-10396b-5p 1 0 0
chr13:75841836|75841974 hsa-miR-328-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4726-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6735-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6738-5p 0 1 0
chr13:75841836|75841974 hsa-miR-6858-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4723-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6831-5p 1 1 0
chr13:75841836|75841974 hsa-miR-6845-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6885-5p 1 0 0
chr13:75841836|75841974 hsa-miR-939-5p 1 1 0
chr13:75841836|75841974 hsa-miR-1238-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4758-5p 1 0 0
chr13:75841836|75841974 hsa-miR-1910-3p 1 0 0
chr13:75841836|75841974 hsa-miR-6511a-5p 1 1 0
chr13:75841836|75841974 hsa-miR-6731-5p 1 0 0
chr13:75841836|75841974 hsa-miR-3679-5p 1 0 0
chr13:75841836|75841974 hsa-miR-4667-5p 0 1 0
chr13:75841836|75841974 hsa-miR-5591-5p 1 0 0
chr13:75841836|75841974 hsa-miR-6859-5p 0 1 0
chr13:75841836|75841974 hsa-miR-6884-5p 0 1 0
chr13:75841836|75841974 hsa-miR-1255b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr13:75841836|75841974
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MTDVSRSISAWRFCSSAGRFCSSASA
Nucleotide Sequence CTGACTGATGTTTCCCGCTCTATCTCTGCCTGGCGCTTCTGCTCCTCCGCAGGACGCTTCTGCTCCTCAGCCTCAGCCTGA
CircID chr13:75841836|75841974
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MMFPALSLPGASAPPQDASAPQPQPEAAFALALPEAVAPISS
Nucleotide Sequence CTGATGTTTCCCGCTCTATCTCTGCCTGGCGCTTCTGCTCCTCCGCAGGACGCTTCTGCTCCTCAGCCTCAGCCTGAAGCCGCTTTTGCTCTTGCTCTTCCTGAAGCTGTTGCTCCCATTTCCTCT
CircID chr13:75841836|75841974
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MALLLLRRTLLLLSLSLKPLLLLLFLKLLLPFP
Nucleotide Sequence CTGGCGCTTCTGCTCCTCCGCAGGACGCTTCTGCTCCTCAGCCTCAGCCTGAAGCCGCTTTTGCTCTTGCTCTTCCTGAAGCTGTTGCTCCCATTTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab