CircRNA Information

General Information
circRNA Basic Information
CircID chr13:77719532|77753358
Strand +
CircType exon
Host Gene ENSG00000139737.21;
Algorism find_circ;CIRI2;DCC;
Sequence GTTATACATTGGCTCTTCAAAGACGTTCACCTCATCAGAGAAATCCCTGACTCCTTTGCAGTGGTGTAGACATGTCCTAGATAACCCAACTCCTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGGTAATTCTAGCCGATGGCGGAGTCTCTTCTCTTCAACTGCCTCACTGGCTTTTCCTTATAGTCCTGTTGCAAGACTCAGCCCTTATAGCAATGGCATTAATACTCCCAGCTTCTCTAAAACCTCAAATAAAGCAATACTAACACCTGAAAAAACAGGTTACACTTCCAGGGGCTCCCCACTCAGTCCCCAGTCATCTATCGACAGTGAGCTGAGTACTTCAGAATTGGAGGATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCGTCTGCAAGAAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATTGAGTTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATGAAGAGGAATTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGATAAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:77719532|77753358 hsa-miR-143-5p 0 0 1
chr13:77719532|77753358 hsa-miR-143-3p 0 0 1
chr13:77719532|77753358 hsa-miR-345-5p 0 0 1
chr13:77719532|77753358 hsa-miR-345-3p 0 0 1
chr13:77719532|77753358 hsa-miR-498-5p 0 0 1
chr13:77719532|77753358 hsa-miR-498-3p 0 0 1
chr13:77719532|77753358 hsa-miR-503-5p 0 0 1
chr13:77719532|77753358 hsa-miR-503-3p 0 0 1
chr13:77719532|77753358 hsa-miR-539-5p 0 0 1
chr13:77719532|77753358 hsa-miR-539-3p 0 0 1
chr13:77719532|77753358 hsa-miR-577 0 0 1
chr13:77719532|77753358 hsa-miR-605-5p 0 0 1
chr13:77719532|77753358 hsa-miR-605-3p 0 0 1
chr13:77719532|77753358 hsa-miR-636 0 0 1
chr13:77719532|77753358 hsa-miR-643 0 0 1
chr13:77719532|77753358 hsa-miR-760 0 0 1
chr13:77719532|77753358 hsa-miR-1200 0 0 1
chr13:77719532|77753358 hsa-miR-671-5p 1 0 1
chr13:77719532|77753358 hsa-miR-136-5p 0 1 1
chr13:77719532|77753358 hsa-miR-27b-5p 0 1 1
chr13:77719532|77753358 hsa-miR-339-5p 0 0 1
chr13:77719532|77753358 hsa-miR-532-5p 0 0 1
chr13:77719532|77753358 hsa-miR-875-3p 0 0 1
chr13:77719532|77753358 hsa-miR-125a-5p 0 0 1
chr13:77719532|77753358 hsa-miR-1274a 0 0 1
chr13:77719532|77753358 hsa-miR-125b 0 0 1
chr13:77719532|77753358 hsa-miR-1274b 0 0 1
chr13:77719532|77753358 hsa-miR-218 0 0 1
chr13:77719532|77753358 hsa-miR-151-3p 0 0 1
chr13:77719532|77753358 hsa-miR-608 1 0 0
chr13:77719532|77753358 hsa-miR-4327 1 1 0
chr13:77719532|77753358 hsa-miR-3651 1 1 0
chr13:77719532|77753358 hsa-miR-3911 1 0 0
chr13:77719532|77753358 hsa-miR-4463 0 1 0
chr13:77719532|77753358 hsa-miR-4538 1 0 0
chr13:77719532|77753358 hsa-miR-8057 0 1 0
chr13:77719532|77753358 hsa-miR-8082 0 1 0
chr13:77719532|77753358 hsa-miR-4695-5p 1 0 0
chr13:77719532|77753358 hsa-miR-6874-5p 0 1 0
chr13:77719532|77753358 hsa-miR-4633-5p 0 1 0
chr13:77719532|77753358 hsa-miR-4671-5p 0 1 0
chr13:77719532|77753358 hsa-miR-6828-5p 1 1 0
chr13:77719532|77753358 hsa-miR-7162-3p 0 1 0
chr13:77719532|77753358 hsa-miR-597-3p 1 0 0
chr13:77719532|77753358 hsa-miR-3940-3p 0 1 0
chr13:77719532|77753358 hsa-miR-3680-3p 0 1 0
chr13:77719532|77753358 hsa-miR-4804-3p 0 1 0
chr13:77719532|77753358 hsa-miR-4639-5p 0 1 0
chr13:77719532|77753358 hsa-miR-6846-5p 1 0 0
chr13:77719532|77753358 hsa-miR-6817-5p 0 1 0
chr13:77719532|77753358 hsa-miR-7157-3p 0 1 0
chr13:77719532|77753358 hsa-miR-301a-5p 0 1 0
chr13:77719532|77753358 hsa-miR-151a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr13:77719532|77753358
ORF Type ORF1
Protein Length 282
Nucleotide Length 846
Protein Sequence MEAARRSLCFRLEQGNSSRWRSLFSSTASLAFPYSPVARLSPYSNGINTPSFSKTSNKAILTPEKTGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSC
Nucleotide Sequence ATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGGTAATTCTAGCCGATGGCGGAGTCTCTTCTCTTCAACTGCCTCACTGGCTTTTCCTTATAGTCCTGTTGCAAGACTCAGCCCTTATAGCAATGGCATTAATACTCCCAGCTTCTCTAAAACCTCAAATAAAGCAATACTAACACCTGAAAAAACAGGTTACACTTCCAGGGGCTCCCCACTCAGTCCCCAGTCATCTATCGACAGTGAGCTGAGTACTTCAGAATTGGAGGATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCGTCTGCAAGAAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATTGAGTTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATGAAGAGGAATTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGATAAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGT

CircID chr13:77719532|77753358
ORF Type ORF2
Protein Length 90
Nucleotide Length 270
Protein Sequence MTNTVWRMKRNLIICHHLSLVFQDVPLSKEEFPIHRLSPAFGSVGGAPVPSIFLQIITSSNSIIHLKPKLQISNQIGPMEISSEEVCLT*
Nucleotide Sequence ATGACCAATACAGTCTGGAGGATGAAGAGGAATTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGATAAGCTCCGAAGAAGTATGCCTAACCTAG

CircID chr13:77719532|77753358
ORF Type ORF3
Protein Length 102
Nucleotide Length 306
Protein Sequence LVADLEFGLEVNNTVAAGNYLKENTGNWGSSYTPECWRKSVNGEFLFGKGNILEDEAEVVANDQIPLHPPDCIGHILDHYMSLFFLNSMTHWNYVLIQMLK*
Nucleotide Sequence TTGGTTGCTGATCTGGAGTTTGGGCTTGAGGTGAATAATACTGTTGCTGCTGGTAATTATTTGAAGGAAAATACTGGGAACTGGGGCTCCTCCTACACTCCCGAATGCTGGAGAAAGTCTGTGAATGGGGAATTCCTCTTTGGAAAGGGGAACATCTTGGAAGACGAGGCTGAGGTGGTGGCAAATGATCAAATTCCTCTTCATCCTCCAGACTGTATTGGTCATATTCTTGATCACTACATGTCCCTTTTTTTCCTGAACTCAATGACACACTGGAACTATGTCTTGATACAGATGCTGAAGTAG

CircID chr13:77719532|77753358
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MILSPWDINYRTSLMFRSWLVCKKKVSGKIMLLLQHLYQDIVPVCH*
Nucleotide Sequence ATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCGTCTGCAAGAAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATTGA

CircID chr13:77719532|77753358
ORF Type ORF5
Protein Length 45
Nucleotide Length 135
Protein Sequence MGNSSLERGTSWKTRLRWWQMIKFLFILQTVLVIFLITTCPFFS*
Nucleotide Sequence ATGGGGAATTCCTCTTTGGAAAGGGGAACATCTTGGAAGACGAGGCTGAGGTGGTGGCAAATGATCAAATTCCTCTTCATCCTCCAGACTGTATTGGTCATATTCTTGATCACTACATGTCCCTTTTTTTCCTGA

CircID chr13:77719532|77753358
ORF Type ORF6
Protein Length 31
Nucleotide Length 93
Protein Sequence MLLLMAVVLGIRARLGILLRSLSPLVLFGC*
Nucleotide Sequence ATGTTGCTACTAATGGCAGTTGTACTTGGCATCCGGGCTAGGTTAGGCATACTTCTTCGGAGCTTATCTCCATTGGTCCTATTTGGTTGCTGA

CircID chr13:77719532|77753358
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MEIESSSNSEVLSSLSIDDWGLSGEPLEV*
Nucleotide Sequence ATGGAGATAGAATCATCCTCCAATTCTGAAGTACTCAGCTCACTGTCGATAGATGACTGGGGACTGAGTGGGGAGCCCCTGGAAGTGTAA

CircID chr13:77719532|77753358
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MLPSQELGYLGHVYTTAKESGISLMR
Nucleotide Sequence CTGCTTCCATCTCAGGAGTTGGGTTATCTAGGACATGTCTACACCACTGCAAAGGAGTCAGGGATTTCTCTGATGAGGTGA

CircID chr13:77719532|77753358
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MLLLMAVVLGIRARLGILLRSLSCSSLKHRERLAASISGVGLSRTCLHHCKGVRDFSDEVNVFEEPMYN
Nucleotide Sequence ATGTTGCTACTAATGGCAGTTGTACTTGGCATCCGGGCTAGGTTAGGCATACTTCTTCGGAGCTTATCTTGCTCCAGTCTAAAGCACAGGGAACGTCTCGCTGCTTCCATCTCAGGAGTTGGGTTATCTAGGACATGTCTACACCACTGCAAAGGAGTCAGGGATTTCTCTGATGAGGTGAACGTCTTTGAAGAGCCAATGTATAAC

CircID chr13:77719532|77753358
ORF Type ORF3
Protein Length 83
Nucleotide Length 249
Protein Sequence MTPLQWCRHVLDNPTPEMEAARRSLCFRLEQDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSC
Nucleotide Sequence CTGACTCCTTTGCAGTGGTGTAGACATGTCCTAGATAACCCAACTCCTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGATAAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGT

CircID chr13:77719532|77753358
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MRWKQRDVPCALDWSKISSEEVCLT
Nucleotide Sequence CTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGATAAGCTCCGAAGAAGTATGCCTAACCTAG

CircID chr13:77719532|77753358
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MPLVATLVLRSPCEIVRVLTQACMELEMEFQEYNLV
Nucleotide Sequence CTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGTA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr13:77719532|77753358 QKI 0 0 1
chr13:77719532|77753358 FBL 1 0 4
chr13:77719532|77753358 MOV10 0 0 5
chr13:77719532|77753358 ELAVL1 2 4 7
chr13:77719532|77753358 ELAVL3 0 3 0
chr13:77719532|77753358 HNRNPA1 2 0 0
chr13:77719532|77753358 NOP56 0 0 1
chr13:77719532|77753358 CSTF2T 0 0 1
chr13:77719532|77753358 FUS 3 3 0
chr13:77719532|77753358 CELF2 2 2 0
chr13:77719532|77753358 IGF2BP1 0 0 2
chr13:77719532|77753358 CNBP 0 0 1
chr13:77719532|77753358 RBM10 0 1 0
chr13:77719532|77753358 TAF15 0 1 1
chr13:77719532|77753358 AGO2 0 3 4
chr13:77719532|77753358 FMR1 0 0 6
chr13:77719532|77753358 PTBP1 1 0 2
chr13:77719532|77753358 IGF2BP2 0 0 4
chr13:77719532|77753358 IGF2BP3 0 1 8
chr13:77719532|77753358 DKC1 1 0 0
chr13:77719532|77753358 NOP58 1 0 10