CircRNA Information

General Information
circRNA Basic Information
CircID chr13:99384614|99384724
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCCTGGCGTCACTGCCATGCTCGGCCCTGGCATCGCACTCCTGGCGTCACTGCCACAGAACTGCCTGCCTTTGGGTGCTCAGACTACTTTGACAGCTGTGCCACTTGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr13:99384614|99384724 hsa-miR-34a-5p 0 0 1
chr13:99384614|99384724 hsa-miR-34a-3p 0 0 1
chr13:99384614|99384724 hsa-miR-449a 0 1 1
chr13:99384614|99384724 hsa-miR-520g-5p 0 0 1
chr13:99384614|99384724 hsa-miR-520g-3p 0 0 1
chr13:99384614|99384724 hsa-miR-520h 0 0 1
chr13:99384614|99384724 hsa-miR-449b-5p 0 0 1
chr13:99384614|99384724 hsa-miR-449b-3p 0 0 1
chr13:99384614|99384724 hsa-miR-665 0 1 1
chr13:99384614|99384724 hsa-miR-940 0 0 1
chr13:99384614|99384724 hsa-miR-34c-5p 0 1 1
chr13:99384614|99384724 hsa-miR-564 1 0 0
chr13:99384614|99384724 hsa-miR-2861 1 0 0
chr13:99384614|99384724 hsa-miR-3197 1 0 0
chr13:99384614|99384724 hsa-miR-4277 0 1 0
chr13:99384614|99384724 hsa-miR-3714 0 1 0
chr13:99384614|99384724 hsa-miR-3918 1 1 0
chr13:99384614|99384724 hsa-miR-3937 0 1 0
chr13:99384614|99384724 hsa-miR-4465 1 0 0
chr13:99384614|99384724 hsa-miR-4514 0 1 0
chr13:99384614|99384724 hsa-miR-4656 1 1 0
chr13:99384614|99384724 hsa-miR-4692 0 1 0
chr13:99384614|99384724 hsa-miR-150-3p 1 0 0
chr13:99384614|99384724 hsa-miR-4433b-3p 0 1 0
chr13:99384614|99384724 hsa-miR-504-3p 1 1 0
chr13:99384614|99384724 hsa-miR-4433a-3p 0 1 0
chr13:99384614|99384724 hsa-miR-6765-5p 1 0 0
chr13:99384614|99384724 hsa-miR-3663-3p 1 1 0
chr13:99384614|99384724 hsa-miR-6089 1 0 0
chr13:99384614|99384724 hsa-miR-4722-5p 0 1 0
chr13:99384614|99384724 hsa-miR-3677-5p 1 0 0
chr13:99384614|99384724 hsa-miR-6806-5p 1 0 0
chr13:99384614|99384724 hsa-miR-197-5p 1 0 0
chr13:99384614|99384724 hsa-miR-5006-5p 1 1 0
chr13:99384614|99384724 hsa-miR-4640-5p 1 0 0
chr13:99384614|99384724 hsa-miR-6753-5p 1 1 0
chr13:99384614|99384724 hsa-miR-6501-5p 1 0 0
chr13:99384614|99384724 hsa-miR-4446-3p 1 0 0
chr13:99384614|99384724 hsa-miR-2276-3p 1 1 0
chr13:99384614|99384724 hsa-miR-6877-5p 0 1 0
chr13:99384614|99384724 hsa-miR-7112-5p 1 0 0
chr13:99384614|99384724 hsa-miR-6871-3p 0 1 0
chr13:99384614|99384724 hsa-miR-891a-3p 0 1 0
chr13:99384614|99384724 hsa-miR-1207-5p 1 0 0
chr13:99384614|99384724 hsa-miR-4763-3p 1 0 0
chr13:99384614|99384724 hsa-miR-6893-5p 0 1 0
chr13:99384614|99384724 hsa-miR-6775-5p 1 0 0
chr13:99384614|99384724 hsa-miR-6803-5p 1 0 0
chr13:99384614|99384724 hsa-miR-186-3p 0 1 0
chr13:99384614|99384724 hsa-miR-5189-5p 1 0 0
chr13:99384614|99384724 hsa-miR-1909-3p 1 0 0
chr13:99384614|99384724 hsa-miR-328-5p 1 0 0
chr13:99384614|99384724 hsa-miR-449c-5p 1 1 0
chr13:99384614|99384724 hsa-miR-4632-5p 1 0 0
chr13:99384614|99384724 hsa-miR-4685-5p 1 1 0
chr13:99384614|99384724 hsa-miR-34b-5p 0 1 0
chr13:99384614|99384724 hsa-miR-6511b-5p 1 0 0
chr13:99384614|99384724 hsa-miR-3085-5p 1 0 0
chr13:99384614|99384724 hsa-miR-10400-3p 1 0 0
chr13:99384614|99384724 hsa-miR-6837-5p 0 1 0
chr13:99384614|99384724 hsa-miR-2682-5p 0 1 0
chr13:99384614|99384724 hsa-miR-6874-3p 0 1 0
chr13:99384614|99384724 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr13:99384614|99384724
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MLGPGIALLASLPQNCLPLGAQTTLTAVPLA
Nucleotide Sequence ATGCTCGGCCCTGGCATCGCACTCCTGGCGTCACTGCCACAGAACTGCCTGCCTTTGGGTGCTCAGACTACTTTGACAGCTGTGCCACTTGCA
CircID chr13:99384614|99384724
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence LASLPCSALASHSWRHCHRTACLWVLRLL
Nucleotide Sequence CTGGCGTCACTGCCATGCTCGGCCCTGGCATCGCACTCCTGGCGTCACTGCCACAGAACTGCCTGCCTTTGGGTGCTCAGACTACTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab