CircRNA Information

General Information
circRNA Basic Information
CircID chr14:100334018|100334217
Strand +
CircType exon
Host Gene ENSG00000140105.16;
Algorism CIRI2;
Sequence CATGCATGTAGTCCACTCCAGAAATCATGCTCGCTTCCCTTGGCACACCAGTGTTCTCCTGCCAAATGACCCTAGACCCTCTGTCCTGCAGAGTCAGGGTGGCTTTTCCCCTGACTGTGTCCGATGCCAAGGAGTCCTGGCCTCCGCAGATGCTTCATTTTGACCCTTGGCTGCAGTGGAAGTCAGCACAGAGCAGTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:100334018|100334217 hsa-miR-96-5p 0 0 1
chr14:100334018|100334217 hsa-miR-96-3p 0 0 1
chr14:100334018|100334217 hsa-miR-182-5p 0 0 1
chr14:100334018|100334217 hsa-miR-182-3p 0 0 1
chr14:100334018|100334217 hsa-miR-122-5p 0 0 1
chr14:100334018|100334217 hsa-miR-122-3p 0 0 1
chr14:100334018|100334217 hsa-miR-141-5p 0 0 1
chr14:100334018|100334217 hsa-miR-141-3p 0 0 1
chr14:100334018|100334217 hsa-miR-200a-5p 0 0 1
chr14:100334018|100334217 hsa-miR-200a-3p 0 0 1
chr14:100334018|100334217 hsa-miR-345-5p 0 0 1
chr14:100334018|100334217 hsa-miR-345-3p 0 0 1
chr14:100334018|100334217 hsa-miR-579-5p 0 0 1
chr14:100334018|100334217 hsa-miR-579-3p 0 0 1
chr14:100334018|100334217 hsa-miR-601 1 1 1
chr14:100334018|100334217 hsa-miR-617 0 0 1
chr14:100334018|100334217 hsa-miR-658 1 1 1
chr14:100334018|100334217 hsa-miR-1271-5p 0 0 1
chr14:100334018|100334217 hsa-miR-1271-3p 0 0 1
chr14:100334018|100334217 hsa-miR-1182 1 1 1
chr14:100334018|100334217 hsa-miR-1227-5p 0 0 1
chr14:100334018|100334217 hsa-miR-1227-3p 0 0 1
chr14:100334018|100334217 hsa-miR-1205 0 0 1
chr14:100334018|100334217 hsa-miR-1286 0 0 1
chr14:100334018|100334217 hsa-miR-1299 0 0 1
chr14:100334018|100334217 hsa-miR-1184 0 0 1
chr14:100334018|100334217 hsa-miR-628-5p 0 0 1
chr14:100334018|100334217 hsa-miR-1207-5p 0 0 1
chr14:100334018|100334217 hsa-miR-509-3-5p 0 1 1
chr14:100334018|100334217 hsa-miR-509-5p 0 1 1
chr14:100334018|100334217 hsa-miR-516b 0 0 1
chr14:100334018|100334217 hsa-miR-184 1 0 0
chr14:100334018|100334217 hsa-miR-762 1 0 0
chr14:100334018|100334217 hsa-miR-760 1 0 0
chr14:100334018|100334217 hsa-miR-1183 1 1 0
chr14:100334018|100334217 hsa-miR-2861 1 0 0
chr14:100334018|100334217 hsa-miR-3137 1 0 0
chr14:100334018|100334217 hsa-miR-3147 1 0 0
chr14:100334018|100334217 hsa-miR-4270 1 0 0
chr14:100334018|100334217 hsa-miR-3945 1 0 0
chr14:100334018|100334217 hsa-miR-4656 1 0 0
chr14:100334018|100334217 hsa-miR-4734 1 0 0
chr14:100334018|100334217 hsa-miR-4739 1 0 0
chr14:100334018|100334217 hsa-miR-5093 1 0 0
chr14:100334018|100334217 hsa-miR-5691 0 1 0
chr14:100334018|100334217 hsa-miR-5787 1 0 0
chr14:100334018|100334217 hsa-miR-6076 1 0 0
chr14:100334018|100334217 hsa-miR-7150 0 1 0
chr14:100334018|100334217 hsa-miR-8057 0 1 0
chr14:100334018|100334217 hsa-miR-8060 1 0 0
chr14:100334018|100334217 hsa-miR-8078 1 0 0
chr14:100334018|100334217 hsa-miR-8080 1 0 0
chr14:100334018|100334217 hsa-miR-8089 1 0 0
chr14:100334018|100334217 hsa-miR-12127 1 0 0
chr14:100334018|100334217 hsa-miR-629-5p 1 0 0
chr14:100334018|100334217 hsa-miR-7155-5p 1 0 0
chr14:100334018|100334217 hsa-miR-4665-3p 1 0 0
chr14:100334018|100334217 hsa-miR-671-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6804-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6089 1 0 0
chr14:100334018|100334217 hsa-miR-4722-5p 1 1 0
chr14:100334018|100334217 hsa-miR-1178-5p 1 1 0
chr14:100334018|100334217 hsa-miR-4728-3p 0 1 0
chr14:100334018|100334217 hsa-miR-7845-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6783-5p 0 1 0
chr14:100334018|100334217 hsa-miR-6772-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6796-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6732-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6798-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6852-5p 1 0 0
chr14:100334018|100334217 hsa-miR-4793-5p 1 1 0
chr14:100334018|100334217 hsa-miR-4786-3p 1 0 0
chr14:100334018|100334217 hsa-miR-4640-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6847-5p 1 0 0
chr14:100334018|100334217 hsa-miR-193a-5p 1 0 0
chr14:100334018|100334217 hsa-miR-7156-3p 0 1 0
chr14:100334018|100334217 hsa-miR-6801-5p 1 0 0
chr14:100334018|100334217 hsa-miR-493-3p 1 0 0
chr14:100334018|100334217 hsa-miR-3620-3p 0 1 0
chr14:100334018|100334217 hsa-miR-6509-3p 0 1 0
chr14:100334018|100334217 hsa-miR-4763-3p 1 0 0
chr14:100334018|100334217 hsa-miR-6812-5p 1 0 0
chr14:100334018|100334217 hsa-miR-1343-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6752-5p 1 0 0
chr14:100334018|100334217 hsa-miR-7110-5p 1 0 0
chr14:100334018|100334217 hsa-miR-1249-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6722-3p 1 0 0
chr14:100334018|100334217 hsa-miR-6797-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6879-5p 1 0 0
chr14:100334018|100334217 hsa-miR-4632-5p 1 0 0
chr14:100334018|100334217 hsa-miR-4685-5p 1 1 0
chr14:100334018|100334217 hsa-miR-4726-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6735-5p 1 1 0
chr14:100334018|100334217 hsa-miR-6794-5p 1 0 0
chr14:100334018|100334217 hsa-miR-939-5p 1 0 0
chr14:100334018|100334217 hsa-miR-324-3p 0 1 0
chr14:100334018|100334217 hsa-miR-6750-5p 1 0 0
chr14:100334018|100334217 hsa-miR-6762-5p 1 0 0
chr14:100334018|100334217 hsa-miR-3059-3p 1 0 0
chr14:100334018|100334217 hsa-miR-520e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:100334018|100334217
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MCPMPRSPGLRRCFILTLGCSGSQHRAV
Nucleotide Sequence CTGTGTCCGATGCCAAGGAGTCCTGGCCTCCGCAGATGCTTCATTTTGACCCTTGGCTGCAGTGGAAGTCAGCACAGAGCAGTG
CircID chr14:100334018|100334217
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MHVVHSRNHARFPWHTSVLLPNDPRPSVLQSQGGFSPDCVRCQGVLASADASF
Nucleotide Sequence ATGCATGTAGTCCACTCCAGAAATCATGCTCGCTTCCCTTGGCACACCAGTGTTCTCCTGCCAAATGACCCTAGACCCTCTGTCCTGCAGAGTCAGGGTGGCTTTTCCCCTGACTGTGTCCGATGCCAAGGAGTCCTGGCCTCCGCAGATGCTTCATTTTGA
CircID chr14:100334018|100334217
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MLASLGTPVFSCQMTLDPLSCRVRVAFPLTVSDAKESWPPQMLHFDPWLQWKSAQSSA
Nucleotide Sequence ATGCTCGCTTCCCTTGGCACACCAGTGTTCTCCTGCCAAATGACCCTAGACCCTCTGTCCTGCAGAGTCAGGGTGGCTTTTCCCCTGACTGTGTCCGATGCCAAGGAGTCCTGGCCTCCGCAGATGCTTCATTTTGACCCTTGGCTGCAGTGGAAGTCAGCACAGAGCAGTGCC
CircID chr14:100334018|100334217
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MQPRVKMKHLRRPGLLGIGHSQGKSHPDSAGQRV
Nucleotide Sequence CTGCAGCCAAGGGTCAAAATGAAGCATCTGCGGAGGCCAGGACTCCTTGGCATCGGACACAGTCAGGGGAAAAGCCACCCTGACTCTGCAGGACAGAGGGTCTAG
CircID chr14:100334018|100334217
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MASDTVRGKATLTLQDRGSRVIWQENTGVPREASMISGVDYMH
Nucleotide Sequence TTGGCATCGGACACAGTCAGGGGAAAAGCCACCCTGACTCTGCAGGACAGAGGGTCTAGGGTCATTTGGCAGGAGAACACTGGTGTGCCAAGGGAAGCGAGCATGATTTCTGGAGTGGACTACATGCAT
CircID chr14:100334018|100334217
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MTSTAAKGQNEASAEARTPWHRTQSGEKPP
Nucleotide Sequence CTGACTTCCACTGCAGCCAAGGGTCAAAATGAAGCATCTGCGGAGGCCAGGACTCCTTGGCATCGGACACAGTCAGGGGAAAAGCCACCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab