CircRNA Information

General Information
circRNA Basic Information
CircID chr14:101994673|101994818
Strand +
CircType Non-Repeat
Host Gene ENSG00000197102.10;
Algorism CIRI2;
Sequence GTTTGGCTTCAGTATCAGTGTTTATGGGATATGCAAGCTGAAAACATCTATAACAGACTTGGAGAAGATCTCAACAAATGGCAGGCTCTCCTGGTCCAAATAAGGAAGGCCAGAGGAACCTTTGACAATGCAGAAACCAAGAAAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:101994673|101994818 hsa-miR-484 0 0 1
chr14:101994673|101994818 hsa-miR-432-5p 0 0 1
chr14:101994673|101994818 hsa-miR-432-3p 0 0 1
chr14:101994673|101994818 hsa-miR-570-5p 0 0 1
chr14:101994673|101994818 hsa-miR-570-3p 0 0 1
chr14:101994673|101994818 hsa-miR-620 0 0 1
chr14:101994673|101994818 hsa-miR-298 0 0 1
chr14:101994673|101994818 hsa-miR-890 0 0 1
chr14:101994673|101994818 hsa-miR-1253 0 0 1
chr14:101994673|101994818 hsa-miR-1270 0 0 1
chr14:101994673|101994818 hsa-miR-1207-5p 0 0 1
chr14:101994673|101994818 hsa-miR-514 0 0 1
chr14:101994673|101994818 hsa-miR-3125 0 1 0
chr14:101994673|101994818 hsa-miR-3155a 0 1 0
chr14:101994673|101994818 hsa-miR-4476 0 1 0
chr14:101994673|101994818 hsa-miR-4531 0 1 0
chr14:101994673|101994818 hsa-miR-4654 1 0 0
chr14:101994673|101994818 hsa-miR-4767 1 0 0
chr14:101994673|101994818 hsa-miR-182-5p 0 1 0
chr14:101994673|101994818 hsa-miR-4753-5p 0 1 0
chr14:101994673|101994818 hsa-miR-3928-3p 0 1 0
chr14:101994673|101994818 hsa-miR-3156-5p 0 1 0
chr14:101994673|101994818 hsa-miR-7161-3p 0 1 0
chr14:101994673|101994818 hsa-miR-296-3p 1 0 0
chr14:101994673|101994818 hsa-miR-7152-3p 0 1 0
chr14:101994673|101994818 hsa-miR-7159-5p 0 1 0
chr14:101994673|101994818 hsa-miR-499b-5p 0 1 0
chr14:101994673|101994818 hsa-miR-4726-5p 1 1 0
chr14:101994673|101994818 hsa-miR-6876-5p 0 1 0
chr14:101994673|101994818 hsa-miR-6859-5p 0 1 0
chr14:101994673|101994818 hsa-miR-3914 0 1 0
chr14:101994673|101994818 hsa-miR-7-1-3p 0 1 0
chr14:101994673|101994818 hsa-miR-7-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:101994673|101994818
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MQAENIYNRLGEDLNKWQALLVQIRKARGTFDNAETKK
Nucleotide Sequence ATGCAAGCTGAAAACATCTATAACAGACTTGGAGAAGATCTCAACAAATGGCAGGCTCTCCTGGTCCAAATAAGGAAGGCCAGAGGAACCTTTGACAATGCAGAAACCAAGAAA
CircID chr14:101994673|101994818
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MVSALSKVPLAFLIWTRRACHLLRSSPSLL
Nucleotide Sequence TTGGTTTCTGCATTGTCAAAGGTTCCTCTGGCCTTCCTTATTTGGACCAGGAGAGCCTGCCATTTGTTGAGATCTTCTCCAAGTCTGTTATAG
CircID chr14:101994673|101994818
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MDQESLPFVEIFSKSVIDVFSLHIP
Nucleotide Sequence TTGGACCAGGAGAGCCTGCCATTTGTTGAGATCTTCTCCAAGTCTGTTATAGATGTTTTCAGCTTGCATATCCCATAA
CircID chr14:101994673|101994818
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MQAENIYNRLGEDLNKWQALLVQIRKARGTFDNAETKK
Nucleotide Sequence ATGCAAGCTGAAAACATCTATAACAGACTTGGAGAAGATCTCAACAAATGGCAGGCTCTCCTGGTCCAAATAAGGAAGGCCAGAGGAACCTTTGACAATGCAGAAACCAAGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr14:101994673|101994818 GTF2F1 0 1 0
chr14:101994673|101994818 RBM5 1 0 0
chr14:101994673|101994818 KHSRP 2 0 0
chr14:101994673|101994818 ELAVL1 1 3 2
chr14:101994673|101994818 NUMA1 0 1 0
chr14:101994673|101994818 SF3B4 1 1 0
chr14:101994673|101994818 HNRNPUL1 1 1 0
chr14:101994673|101994818 FAM120A 1 2 0
chr14:101994673|101994818 PRPF8 2 4 0
chr14:101994673|101994818 UPF1 3 1 0
chr14:101994673|101994818 TNRC6A 2 3 0
chr14:101994673|101994818 FMR1 9 11 3
chr14:101994673|101994818 CPSF6 1 0 0
chr14:101994673|101994818 SAFB2 2 2 0
chr14:101994673|101994818 CNBP 2 1 0
chr14:101994673|101994818 TROVE2 1 0 0
chr14:101994673|101994818 FUS 2 1 0
chr14:101994673|101994818 DGCR8 2 3 0
chr14:101994673|101994818 SRSF7 0 1 0
chr14:101994673|101994818 SRSF1 3 1 0
chr14:101994673|101994818 NOP58 3 4 3
chr14:101994673|101994818 TARBP2 0 1 0
chr14:101994673|101994818 U2AF1 1 1 0
chr14:101994673|101994818 ADAR 0 1 0
chr14:101994673|101994818 U2AF2 12 5 0
chr14:101994673|101994818 SRSF9 1 0 0
chr14:101994673|101994818 HNRNPU 0 1 0
chr14:101994673|101994818 DDX54 8 11 5
chr14:101994673|101994818 RBM10 7 3 0
chr14:101994673|101994818 HNRNPL 1 0 0
chr14:101994673|101994818 HNRNPM 3 0 0
chr14:101994673|101994818 SF3A3 1 0 0
chr14:101994673|101994818 PCBP2 2 0 0
chr14:101994673|101994818 PTBP1 2 3 0
chr14:101994673|101994818 HNRNPC 1 1 0
chr14:101994673|101994818 TRA2A 1 0 0
chr14:101994673|101994818 HNRNPA2B1 3 2 0
chr14:101994673|101994818 ZNF184 1 1 0
chr14:101994673|101994818 WTAP 0 1 0
chr14:101994673|101994818 DDX3X 1 0 0
chr14:101994673|101994818 SMNDC1 0 1 0
chr14:101994673|101994818 MSI2 0 2 1
chr14:101994673|101994818 ACIN1 4 7 4
chr14:101994673|101994818 LIN28B 7 1 1
chr14:101994673|101994818 LIN28A 1 3 1
chr14:101994673|101994818 FXR1 3 5 0
chr14:101994673|101994818 FXR2 3 1 0
chr14:101994673|101994818 SND1 3 1 0
chr14:101994673|101994818 IGF2BP1 0 5 0
chr14:101994673|101994818 DICER1 0 1 0
chr14:101994673|101994818 IGF2BP3 2 3 1
chr14:101994673|101994818 IGF2BP2 5 12 4
chr14:101994673|101994818 AUH 1 0 0
chr14:101994673|101994818 TARDBP 1 0 0
chr14:101994673|101994818 STAU1 1 0 0
chr14:101994673|101994818 TAF15 0 1 0
chr14:101994673|101994818 BUD13 2 0 0
chr14:101994673|101994818 RBFOX2 1 1 0
chr14:101994673|101994818 RBM47 2 2 1
chr14:101994673|101994818 SLTM 0 2 0
chr14:101994673|101994818 EIF4G2 0 1 0
chr14:101994673|101994818 CSTF2T 1 3 1
chr14:101994673|101994818 TIA1 1 0 0
chr14:101994673|101994818 NONO 1 0 0
chr14:101994673|101994818 RBM27 0 1 0
chr14:101994673|101994818 HNRNPK 2 0 0
chr14:101994673|101994818 YWHAG 1 0 0
chr14:101994673|101994818 AGO2 5 4 0
chr14:101994673|101994818 AGO1 1 0 0
chr14:101994673|101994818 EIF4A3 5 7 2
chr14:101994673|101994818 FBL 6 3 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab