CircRNA Information

General Information
circRNA Basic Information
CircID chr14:103126524|103126657
Strand +
CircType exon
Host Gene ENSG00000185215.7;
Algorism CIRI2;
Sequence CCGGCTGCGTCCTCGGGCTCCGCTGAGCTGGGCTGACCCTTCTTCTTCTTCCCTTTGGTGAAGACGCAGAACACATTGGCCAGGCCTTTGGACTTCTTCTTCTTCTCCTTCTTCTTCTTCGCCGCCTCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:103126524|103126657 hsa-miR-197-5p 0 0 1
chr14:103126524|103126657 hsa-miR-197-3p 0 0 1
chr14:103126524|103126657 hsa-miR-412-5p 0 0 1
chr14:103126524|103126657 hsa-miR-412-3p 0 0 1
chr14:103126524|103126657 hsa-miR-611 0 0 1
chr14:103126524|103126657 hsa-miR-1253 1 1 1
chr14:103126524|103126657 hsa-miR-923 0 0 1
chr14:103126524|103126657 hsa-miR-765 1 1 0
chr14:103126524|103126657 hsa-miR-1203 1 1 0
chr14:103126524|103126657 hsa-miR-2861 1 0 0
chr14:103126524|103126657 hsa-miR-3132 1 0 0
chr14:103126524|103126657 hsa-miR-3154 1 1 0
chr14:103126524|103126657 hsa-miR-3185 1 1 0
chr14:103126524|103126657 hsa-miR-3196 1 0 0
chr14:103126524|103126657 hsa-miR-4267 0 1 0
chr14:103126524|103126657 hsa-miR-4271 1 1 0
chr14:103126524|103126657 hsa-miR-3916 1 1 0
chr14:103126524|103126657 hsa-miR-4467 1 0 0
chr14:103126524|103126657 hsa-miR-4516 0 1 0
chr14:103126524|103126657 hsa-miR-4533 1 0 0
chr14:103126524|103126657 hsa-miR-3960 1 0 0
chr14:103126524|103126657 hsa-miR-4688 1 0 0
chr14:103126524|103126657 hsa-miR-4739 1 1 0
chr14:103126524|103126657 hsa-miR-5685 0 1 0
chr14:103126524|103126657 hsa-miR-5703 0 1 0
chr14:103126524|103126657 hsa-miR-6124 1 0 0
chr14:103126524|103126657 hsa-miR-6745 1 0 0
chr14:103126524|103126657 hsa-miR-8072 1 0 0
chr14:103126524|103126657 hsa-miR-12114 1 0 0
chr14:103126524|103126657 hsa-miR-12115 1 1 0
chr14:103126524|103126657 hsa-miR-6765-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6894-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6854-5p 0 1 0
chr14:103126524|103126657 hsa-miR-6510-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6746-5p 1 0 0
chr14:103126524|103126657 hsa-miR-4709-3p 1 0 0
chr14:103126524|103126657 hsa-miR-1178-5p 0 1 0
chr14:103126524|103126657 hsa-miR-3180-3p 1 0 0
chr14:103126524|103126657 hsa-miR-6760-5p 1 1 0
chr14:103126524|103126657 hsa-miR-6824-5p 1 0 0
chr14:103126524|103126657 hsa-miR-1289 0 1 0
chr14:103126524|103126657 hsa-miR-3191-3p 0 1 0
chr14:103126524|103126657 hsa-miR-7846-3p 0 1 0
chr14:103126524|103126657 hsa-miR-744-5p 1 0 0
chr14:103126524|103126657 hsa-miR-10400-5p 1 0 0
chr14:103126524|103126657 hsa-miR-4763-3p 1 0 0
chr14:103126524|103126657 hsa-miR-6865-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6743-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6754-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6815-5p 1 1 0
chr14:103126524|103126657 hsa-miR-7107-5p 1 0 0
chr14:103126524|103126657 hsa-miR-11181-3p 1 0 0
chr14:103126524|103126657 hsa-miR-5196-5p 1 1 0
chr14:103126524|103126657 hsa-miR-6780b-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6836-5p 1 0 0
chr14:103126524|103126657 hsa-miR-10396a-5p 1 0 0
chr14:103126524|103126657 hsa-miR-4649-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6729-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6858-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6831-5p 1 0 0
chr14:103126524|103126657 hsa-miR-1199-5p 1 0 0
chr14:103126524|103126657 hsa-miR-7843-5p 1 0 0
chr14:103126524|103126657 hsa-miR-3173-3p 1 0 0
chr14:103126524|103126657 hsa-miR-4747-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6876-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6750-5p 1 0 0
chr14:103126524|103126657 hsa-miR-6822-5p 1 0 0
chr14:103126524|103126657 hsa-miR-4690-3p 0 1 0
chr14:103126524|103126657 hsa-miR-10522-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:103126524|103126657
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MVKTQNTLARPLDFFFFSFFFFAASS
Nucleotide Sequence TTGGTGAAGACGCAGAACACATTGGCCAGGCCTTTGGACTTCTTCTTCTTCTCCTTCTTCTTCTTCGCCGCCTCTTCC
CircID chr14:103126524|103126657
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MTLLLLPFGEDAEHIGQAFGLLLLLLLLLRRLFL
Nucleotide Sequence CTGACCCTTCTTCTTCTTCCCTTTGGTGAAGACGCAGAACACATTGGCCAGGCCTTTGGACTTCTTCTTCTTCTCCTTCTTCTTCTTCGCCGCCTCTTCCTC
CircID chr14:103126524|103126657
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MANVFCVFTKGKKKKGQPSSAEPEDAA
Nucleotide Sequence CTGGCCAATGTGTTCTGCGTCTTCACCAAAGGGAAGAAGAAGAAGGGTCAGCCCAGCTCAGCGGAGCCCGAGGACGCAGCC
CircID chr14:103126524|103126657
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MCSASSPKGRRRRVSPAQRSPRTQP
Nucleotide Sequence ATGTGTTCTGCGTCTTCACCAAAGGGAAGAAGAAGAAGGGTCAGCCCAGCTCAGCGGAGCCCGAGGACGCAGCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab