CircRNA Information

General Information
circRNA Basic Information
CircID chr14:103734074|103734297
Strand +
CircType exon
Host Gene ENSG00000088808.15;
Algorism CIRI2;
Sequence CAGGGCCAGGTAGACGGGGCTGTTTGGTGCCTGAAGGATGGCAGACGCCTGGTGTCAGGAGGGGCCGCCACCAAGGAGCAGCAGCTGGGGCAGAGGAGCTGGGGTCAGGGGCCACCCCTCTCTGCCGATCTCCCTGCCTGGGCTGGCTGTGAGGCCACCTTTGTCCCAGGCCCAGCCTCAAGGCAAGGAGGGCGCTTCACTGAGGTGTGAATTGTACGTACAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:103734074|103734297 hsa-miR-205-5p 0 0 1
chr14:103734074|103734297 hsa-miR-205-3p 0 0 1
chr14:103734074|103734297 hsa-miR-377-5p 0 0 1
chr14:103734074|103734297 hsa-miR-377-3p 0 0 1
chr14:103734074|103734297 hsa-miR-328-5p 0 0 1
chr14:103734074|103734297 hsa-miR-328-3p 0 0 1
chr14:103734074|103734297 hsa-miR-346 0 0 1
chr14:103734074|103734297 hsa-miR-608 1 1 1
chr14:103734074|103734297 hsa-miR-619-5p 0 0 1
chr14:103734074|103734297 hsa-miR-619-3p 0 0 1
chr14:103734074|103734297 hsa-miR-661 1 1 1
chr14:103734074|103734297 hsa-miR-940 0 0 1
chr14:103734074|103734297 hsa-miR-1228-5p 0 0 1
chr14:103734074|103734297 hsa-miR-1228-3p 0 0 1
chr14:103734074|103734297 hsa-miR-663b 0 0 1
chr14:103734074|103734297 hsa-miR-1291 0 0 1
chr14:103734074|103734297 hsa-miR-1304-5p 0 0 1
chr14:103734074|103734297 hsa-miR-1304-3p 0 0 1
chr14:103734074|103734297 hsa-miR-486-5p 0 0 1
chr14:103734074|103734297 hsa-miR-485-5p 0 1 1
chr14:103734074|103734297 hsa-miR-502-5p 0 1 1
chr14:103734074|103734297 hsa-miR-1207-5p 1 1 1
chr14:103734074|103734297 hsa-miR-324-3p 1 1 1
chr14:103734074|103734297 hsa-miR-1302 0 0 1
chr14:103734074|103734297 hsa-miR-220a 0 0 1
chr14:103734074|103734297 hsa-miR-638 1 1 0
chr14:103734074|103734297 hsa-miR-762 1 1 0
chr14:103734074|103734297 hsa-miR-1913 0 1 0
chr14:103734074|103734297 hsa-miR-4298 0 1 0
chr14:103734074|103734297 hsa-miR-4268 0 1 0
chr14:103734074|103734297 hsa-miR-4269 1 1 0
chr14:103734074|103734297 hsa-miR-4270 0 1 0
chr14:103734074|103734297 hsa-miR-4290 0 1 0
chr14:103734074|103734297 hsa-miR-3651 1 0 0
chr14:103734074|103734297 hsa-miR-4448 0 1 0
chr14:103734074|103734297 hsa-miR-4505 0 1 0
chr14:103734074|103734297 hsa-miR-4673 0 1 0
chr14:103734074|103734297 hsa-miR-4674 1 0 0
chr14:103734074|103734297 hsa-miR-4692 0 1 0
chr14:103734074|103734297 hsa-miR-4739 1 1 0
chr14:103734074|103734297 hsa-miR-4780 0 1 0
chr14:103734074|103734297 hsa-miR-5685 0 1 0
chr14:103734074|103734297 hsa-miR-5787 0 1 0
chr14:103734074|103734297 hsa-miR-7706 0 1 0
chr14:103734074|103734297 hsa-miR-18a-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6765-5p 1 0 0
chr14:103734074|103734297 hsa-miR-215-3p 0 1 0
chr14:103734074|103734297 hsa-miR-766-3p 0 1 0
chr14:103734074|103734297 hsa-miR-210-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6089 1 0 0
chr14:103734074|103734297 hsa-miR-593-5p 1 1 0
chr14:103734074|103734297 hsa-miR-874-5p 1 0 0
chr14:103734074|103734297 hsa-miR-6762-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6787-3p 1 1 0
chr14:103734074|103734297 hsa-miR-1915-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6798-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6760-5p 0 1 0
chr14:103734074|103734297 hsa-miR-3194-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6858-3p 0 1 0
chr14:103734074|103734297 hsa-miR-3186-5p 1 1 0
chr14:103734074|103734297 hsa-miR-2277-3p 1 0 0
chr14:103734074|103734297 hsa-miR-4640-5p 1 0 0
chr14:103734074|103734297 hsa-miR-3667-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6749-5p 1 0 0
chr14:103734074|103734297 hsa-miR-6780a-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4667-3p 0 1 0
chr14:103734074|103734297 hsa-miR-378a-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6736-3p 0 1 0
chr14:103734074|103734297 hsa-miR-5010-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6730-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4732-3p 0 1 0
chr14:103734074|103734297 hsa-miR-1911-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6856-3p 0 1 0
chr14:103734074|103734297 hsa-miR-5088-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4749-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6770-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4750-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4727-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6800-3p 1 0 0
chr14:103734074|103734297 hsa-miR-4763-3p 0 1 0
chr14:103734074|103734297 hsa-miR-6893-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6754-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6815-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6842-5p 0 1 0
chr14:103734074|103734297 hsa-miR-6808-5p 0 1 0
chr14:103734074|103734297 hsa-miR-3127-3p 1 0 0
chr14:103734074|103734297 hsa-miR-6758-5p 0 1 0
chr14:103734074|103734297 hsa-miR-10392-3p 1 1 0
chr14:103734074|103734297 hsa-miR-6744-3p 1 1 0
chr14:103734074|103734297 hsa-miR-4690-3p 1 1 0
chr14:103734074|103734297 hsa-miR-4769-3p 0 1 0
chr14:103734074|103734297 hsa-miR-4423-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:103734074|103734297
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MKDGRRLVSGGAATKEQQLGQRSWGQGPPLSADLPAWAGCEATFVPGPASRQGGRFTEV
Nucleotide Sequence CTGAAGGATGGCAGACGCCTGGTGTCAGGAGGGGCCGCCACCAAGGAGCAGCAGCTGGGGCAGAGGAGCTGGGGTCAGGGGCCACCCCTCTCTGCCGATCTCCCTGCCTGGGCTGGCTGTGAGGCCACCTTTGTCCCAGGCCCAGCCTCAAGGCAAGGAGGGCGCTTCACTGAGGTGTGA
CircID chr14:103734074|103734297
ORF Type ORF2
Protein Length 62
Nucleotide Length 186
Protein Sequence MADAWCQEGPPPRSSSWGRGAGVRGHPSLPISLPGLAVRPPLSQAQPQGKEGASLRCELYVQ
Nucleotide Sequence ATGGCAGACGCCTGGTGTCAGGAGGGGCCGCCACCAAGGAGCAGCAGCTGGGGCAGAGGAGCTGGGGTCAGGGGCCACCCCTCTCTGCCGATCTCCCTGCCTGGGCTGGCTGTGAGGCCACCTTTGTCCCAGGCCCAGCCTCAAGGCAAGGAGGGCGCTTCACTGAGGTGTGAATTGTACGTACAG
CircID chr14:103734074|103734297
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MVPEGWQTPGVRRGRHQGAAAGAEELGSGATPLCRSPCLGWL
Nucleotide Sequence TTGGTGCCTGAAGGATGGCAGACGCCTGGTGTCAGGAGGGGCCGCCACCAAGGAGCAGCAGCTGGGGCAGAGGAGCTGGGGTCAGGGGCCACCCCTCTCTGCCGATCTCCCTGCCTGGGCTGGCTGTGA
CircID chr14:103734074|103734297
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MRLGLGQRWPHSQPRQGDRQRGVAPDPSSSAPAAAPWWRPLLTPGVCHPSGTKQPRLPGP
Nucleotide Sequence TTGAGGCTGGGCCTGGGACAAAGGTGGCCTCACAGCCAGCCCAGGCAGGGAGATCGGCAGAGAGGGGTGGCCCCTGACCCCAGCTCCTCTGCCCCAGCTGCTGCTCCTTGGTGGCGGCCCCTCCTGACACCAGGCGTCTGCCATCCTTCAGGCACCAAACAGCCCCGTCTACCTGGCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab