CircRNA Information

General Information
circRNA Basic Information
CircID chr14:103963079|103966831
Strand +
CircType exon
Host Gene ENSG00000156414.18;
Algorism find_circ;CIRI2;DCC;
Sequence GTCCAAGGCCATCTTTGGCTAAATTAAGCAGTGTGACATGCATCCCAGGGACAACTTATAAATATCCTGATTTGCCTATAAGTCGATACAAGGAAGAGGTTGTGTCTTTGATAGAAAGTAATTCCGTGGTGATTATCCATGGGGCCACGGGAAGCGGTAAAAGCACTCAGCTCCCGCAGTATATCTTGGACCACTACGTTCAGCGCTCCGCCTACTGCAGCATTGTGGTCACCCAGCCCCGGAAGATAGGGGCAAGCAGCATCGCCAGGTGGATCAGTAAAGAGCGTGCCTGGACCCTGGGAGGTGTGGTGGGCTACCAGGTAGGGCTAGAGAAAATAGCAACAGAGGACACCAGGCTAATTTATATGACAACTGGAGTCCTGCTTCAGAAAATAGTTAGTGCCAAGAGTTTGATGGAATTCACACATATCATCATTGATGAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:103963079|103966831 hsa-miR-132-5p 0 1 1
chr14:103963079|103966831 hsa-miR-25-5p 0 1 1
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr14:103963079|103966831
ORF Type ORF1
Protein Length 143
Nucleotide Length 429
Protein Sequence LAKLSSVTCIPGTTYKYPDLPISRYKEEVVSLIESNSVVIIHGATGSGKSTQLPQYILDHYVQRSAYCSIVVTQPRKIGASSIARWISKERAWTLGGVVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLMEFTHIIIDE
Nucleotide Sequence TTGGCTAAATTAAGCAGTGTGACATGCATCCCAGGGACAACTTATAAATATCCTGATTTGCCTATAAGTCGATACAAGGAAGAGGTTGTGTCTTTGATAGAAAGTAATTCCGTGGTGATTATCCATGGGGCCACGGGAAGCGGTAAAAGCACTCAGCTCCCGCAGTATATCTTGGACCACTACGTTCAGCGCTCCGCCTACTGCAGCATTGTGGTCACCCAGCCCCGGAAGATAGGGGCAAGCAGCATCGCCAGGTGGATCAGTAAAGAGCGTGCCTGGACCCTGGGAGGTGTGGTGGGCTACCAGGTAGGGCTAGAGAAAATAGCAACAGAGGACACCAGGCTAATTTATATGACAACTGGAGTCCTGCTTCAGAAAATAGTTAGTGCCAAGAGTTTGATGGAATTCACACATATCATCATTGATGAA

CircID chr14:103963079|103966831
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MDNHHGITFYQRHNLFLVSTYRQIRIFISCPWDACHTA*
Nucleotide Sequence ATGGATAATCACCACGGAATTACTTTCTATCAAAGACACAACCTCTTCCTTGTATCGACTTATAGGCAAATCAGGATATTTATAAGTTGTCCCTGGGATGCATGTCACACTGCTTAA

CircID chr14:103963079|103966831
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MGPREAVKALSSRSISWTTTFSAPPTAALWSPSPGR*
Nucleotide Sequence ATGGGGCCACGGGAAGCGGTAAAAGCACTCAGCTCCCGCAGTATATCTTGGACCACTACGTTCAGCGCTCCGCCTACTGCAGCATTGTGGTCACCCAGCCCCGGAAGATAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr14:103963079|103966831 U2AF2 2 2 0
chr14:103963079|103966831 FUS 1 1 0
chr14:103963079|103966831 EIF4A3 1 1 7