CircRNA Information

General Information
circRNA Basic Information
CircID chr14:104704037|104704236
Strand -
CircType exon
Host Gene ENSG00000203485.11;
Algorism CIRI2;
Sequence CTAAGCAGCACCTCCAGATGGCAGGGAGGTGGCTCCCTCGGAGTAACCCCAGGGGTCCAGCCAGAAGCCAGGTCTCAGGCTAGAATCCAGCTCACTGTCCCTGGCAGCTGCCCACAGAAACTAGGGTTGCAGCAGCCATAGAAAGGACAGAATGAGCTCATATCCTTTGCACACCGTGGATGGAGCTGGAGGCCGTGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:104704037|104704236 hsa-miR-19a-5p 0 0 1
chr14:104704037|104704236 hsa-miR-19a-3p 0 0 1
chr14:104704037|104704236 hsa-miR-22-5p 0 0 1
chr14:104704037|104704236 hsa-miR-22-3p 0 0 1
chr14:104704037|104704236 hsa-miR-149-5p 0 0 1
chr14:104704037|104704236 hsa-miR-149-3p 0 0 1
chr14:104704037|104704236 hsa-miR-135b-5p 0 0 1
chr14:104704037|104704236 hsa-miR-135b-3p 0 0 1
chr14:104704037|104704236 hsa-miR-527 0 0 1
chr14:104704037|104704236 hsa-miR-558 0 0 1
chr14:104704037|104704236 hsa-miR-596 1 0 1
chr14:104704037|104704236 hsa-miR-604 0 0 1
chr14:104704037|104704236 hsa-miR-631 0 0 1
chr14:104704037|104704236 hsa-miR-647 0 0 1
chr14:104704037|104704236 hsa-miR-766-5p 0 0 1
chr14:104704037|104704236 hsa-miR-766-3p 0 0 1
chr14:104704037|104704236 hsa-miR-1287-5p 0 0 1
chr14:104704037|104704236 hsa-miR-1287-3p 0 0 1
chr14:104704037|104704236 hsa-miR-769-5p 0 1 1
chr14:104704037|104704236 hsa-miR-331-3p 0 1 1
chr14:104704037|104704236 hsa-miR-556-5p 0 0 1
chr14:104704037|104704236 hsa-miR-518a-5p 0 0 1
chr14:104704037|104704236 hsa-miR-135a 0 0 1
chr14:104704037|104704236 hsa-miR-19b 0 0 1
chr14:104704037|104704236 hsa-miR-516b 0 0 1
chr14:104704037|104704236 hsa-miR-661 1 0 0
chr14:104704037|104704236 hsa-miR-762 1 0 0
chr14:104704037|104704236 hsa-miR-3170 0 1 0
chr14:104704037|104704236 hsa-miR-3176 1 0 0
chr14:104704037|104704236 hsa-miR-4324 0 1 0
chr14:104704037|104704236 hsa-miR-4329 0 1 0
chr14:104704037|104704236 hsa-miR-5092 0 1 0
chr14:104704037|104704236 hsa-miR-5190 1 0 0
chr14:104704037|104704236 hsa-miR-378j 0 1 0
chr14:104704037|104704236 hsa-miR-134-3p 0 1 0
chr14:104704037|104704236 hsa-miR-211-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6089 1 0 0
chr14:104704037|104704236 hsa-miR-1225-3p 1 0 0
chr14:104704037|104704236 hsa-miR-1301-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6762-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6842-3p 1 1 0
chr14:104704037|104704236 hsa-miR-7845-5p 0 1 0
chr14:104704037|104704236 hsa-miR-5006-5p 1 1 0
chr14:104704037|104704236 hsa-miR-6815-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6852-5p 0 1 0
chr14:104704037|104704236 hsa-miR-3944-3p 1 0 0
chr14:104704037|104704236 hsa-miR-1908-3p 1 0 0
chr14:104704037|104704236 hsa-miR-7113-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6749-5p 1 0 0
chr14:104704037|104704236 hsa-miR-4743-3p 0 1 0
chr14:104704037|104704236 hsa-miR-1306-5p 0 1 0
chr14:104704037|104704236 hsa-miR-516b-5p 0 1 0
chr14:104704037|104704236 hsa-miR-7113-5p 0 1 0
chr14:104704037|104704236 hsa-miR-4649-3p 1 0 0
chr14:104704037|104704236 hsa-miR-502-5p 1 1 0
chr14:104704037|104704236 hsa-miR-3670 1 1 0
chr14:104704037|104704236 hsa-miR-5001-5p 1 0 0
chr14:104704037|104704236 hsa-miR-3620-5p 1 1 0
chr14:104704037|104704236 hsa-miR-939-5p 1 0 0
chr14:104704037|104704236 hsa-miR-6855-5p 0 1 0
chr14:104704037|104704236 hsa-miR-6791-5p 0 1 0
chr14:104704037|104704236 hsa-miR-4757-5p 1 0 0
chr14:104704037|104704236 hsa-miR-3085-3p 0 1 0
chr14:104704037|104704236 hsa-miR-6744-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:104704037|104704236
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MSSFCPFYGCCNPSFCGQLPGTVSWILA
Nucleotide Sequence ATGAGCTCATTCTGTCCTTTCTATGGCTGCTGCAACCCTAGTTTCTGTGGGCAGCTGCCAGGGACAGTGAGCTGGATTCTAGCCTGA
CircID chr14:104704037|104704236
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MWAAARDSELDSSLRPGFWLDPWGYSEGATSLPSGGAA
Nucleotide Sequence CTGTGGGCAGCTGCCAGGGACAGTGAGCTGGATTCTAGCCTGAGACCTGGCTTCTGGCTGGACCCCTGGGGTTACTCCGAGGGAGCCACCTCCCTGCCATCTGGAGGTGCTGCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab