CircRNA Information

General Information
circRNA Basic Information
CircID chr14:105380891|105381099
Strand +
CircType exon
Host Gene ENSG00000179364.12;
Algorism CIRI2;
Sequence CTGGTGGAGGGGATGACAAGGGACTCTGTCTTGGTGATCCTCCCGCTGGGCGGCAGCCTCTCCGTGAACACATCCAGGGTGGAGGCCTCAGCCTCGGGGCTGTCCTCAGGCTGTCCAGGGTGCTCCCTCGGGCCTGGCACACCCTGCTGAGCAGAGACGGGCCTGGAGCCTCCCGTGGAAACCACACCCGTGCTGCGGCCTCTCCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:105380891|105381099 hsa-miR-214-5p 0 0 1
chr14:105380891|105381099 hsa-miR-214-3p 0 0 1
chr14:105380891|105381099 hsa-miR-185-5p 0 0 1
chr14:105380891|105381099 hsa-miR-185-3p 0 0 1
chr14:105380891|105381099 hsa-miR-593-5p 0 0 1
chr14:105380891|105381099 hsa-miR-593-3p 0 0 1
chr14:105380891|105381099 hsa-miR-623 0 0 1
chr14:105380891|105381099 hsa-miR-922 0 0 1
chr14:105380891|105381099 hsa-miR-1227-5p 0 0 1
chr14:105380891|105381099 hsa-miR-1227-3p 0 0 1
chr14:105380891|105381099 hsa-miR-1224-5p 0 0 1
chr14:105380891|105381099 hsa-miR-485-5p 0 1 1
chr14:105380891|105381099 hsa-miR-767-3p 0 0 1
chr14:105380891|105381099 hsa-miR-663a 1 0 0
chr14:105380891|105381099 hsa-miR-761 0 1 0
chr14:105380891|105381099 hsa-miR-1295a 1 0 0
chr14:105380891|105381099 hsa-miR-544b 0 1 0
chr14:105380891|105381099 hsa-miR-4430 0 1 0
chr14:105380891|105381099 hsa-miR-3135b 1 1 0
chr14:105380891|105381099 hsa-miR-4510 0 1 0
chr14:105380891|105381099 hsa-miR-4656 1 0 0
chr14:105380891|105381099 hsa-miR-5192 1 0 0
chr14:105380891|105381099 hsa-miR-5787 1 0 0
chr14:105380891|105381099 hsa-miR-6069 1 0 0
chr14:105380891|105381099 hsa-miR-6133 0 1 0
chr14:105380891|105381099 hsa-miR-8089 1 1 0
chr14:105380891|105381099 hsa-miR-4747-3p 0 1 0
chr14:105380891|105381099 hsa-miR-128-1-5p 1 1 0
chr14:105380891|105381099 hsa-miR-4731-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6861-5p 1 0 0
chr14:105380891|105381099 hsa-miR-29b-2-5p 0 1 0
chr14:105380891|105381099 hsa-miR-3663-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6089 1 1 0
chr14:105380891|105381099 hsa-miR-4755-3p 0 1 0
chr14:105380891|105381099 hsa-miR-7160-5p 0 1 0
chr14:105380891|105381099 hsa-miR-2467-5p 0 1 0
chr14:105380891|105381099 hsa-miR-2467-3p 1 0 0
chr14:105380891|105381099 hsa-miR-6728-3p 0 1 0
chr14:105380891|105381099 hsa-miR-7855-5p 1 0 0
chr14:105380891|105381099 hsa-miR-5006-5p 0 1 0
chr14:105380891|105381099 hsa-miR-204-3p 1 0 0
chr14:105380891|105381099 hsa-miR-619-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6771-5p 1 0 0
chr14:105380891|105381099 hsa-miR-4638-3p 0 1 0
chr14:105380891|105381099 hsa-miR-3690 0 1 0
chr14:105380891|105381099 hsa-miR-6887-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6871-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6856-3p 0 1 0
chr14:105380891|105381099 hsa-miR-4649-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6729-3p 0 1 0
chr14:105380891|105381099 hsa-miR-6780b-3p 0 1 0
chr14:105380891|105381099 hsa-miR-10400-5p 1 0 0
chr14:105380891|105381099 hsa-miR-4763-3p 1 0 0
chr14:105380891|105381099 hsa-miR-6778-5p 0 1 0
chr14:105380891|105381099 hsa-miR-6743-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6752-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6756-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6722-3p 1 0 0
chr14:105380891|105381099 hsa-miR-7111-5p 1 0 0
chr14:105380891|105381099 hsa-miR-4728-5p 1 0 0
chr14:105380891|105381099 hsa-miR-10396b-5p 1 0 0
chr14:105380891|105381099 hsa-miR-1909-3p 1 0 0
chr14:105380891|105381099 hsa-miR-6889-5p 0 1 0
chr14:105380891|105381099 hsa-miR-6785-5p 1 0 0
chr14:105380891|105381099 hsa-miR-3184-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6791-5p 1 0 0
chr14:105380891|105381099 hsa-miR-4756-5p 1 0 0
chr14:105380891|105381099 hsa-miR-6884-5p 0 1 0
chr14:105380891|105381099 hsa-miR-6827-3p 0 1 0
chr14:105380891|105381099 hsa-miR-497-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:105380891|105381099
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence LVEGMTRDSVLVILPLGGSLSVNTSRVEASASGLSSGCPGCSLGPGTPC
Nucleotide Sequence CTGGTGGAGGGGATGACAAGGGACTCTGTCTTGGTGATCCTCCCGCTGGGCGGCAGCCTCTCCGTGAACACATCCAGGGTGGAGGCCTCAGCCTCGGGGCTGTCCTCAGGCTGTCCAGGGTGCTCCCTCGGGCCTGGCACACCCTGCTGA
CircID chr14:105380891|105381099
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MAHPAEQRRAWSLPWKPHPCCGLSS
Nucleotide Sequence CTGGCACACCCTGCTGAGCAGAGACGGGCCTGGAGCCTCCCGTGGAAACCACACCCGTGCTGCGGCCTCTCCAGC
CircID chr14:105380891|105381099
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MSRVLPRAWHTLLSRDGPGASRGNHTRAAASPA
Nucleotide Sequence CTGTCCAGGGTGCTCCCTCGGGCCTGGCACACCCTGCTGAGCAGAGACGGGCCTGGAGCCTCCCGTGGAAACCACACCCGTGCTGCGGCCTCTCCAGCC
CircID chr14:105380891|105381099
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MDVFTERLPPSGRITKTESLVIPST
Nucleotide Sequence CTGGATGTGTTCACGGAGAGGCTGCCGCCCAGCGGGAGGATCACCAAGACAGAGTCCCTTGTCATCCCCTCCACC
CircID chr14:105380891|105381099
ORF Type ORF5
Protein Length 51
Nucleotide Length 153
Protein Sequence MLSRVCQARGSTLDSLRTAPRLRPPPWMCSRRGCRPAGGSPRQSPLSSPPP
Nucleotide Sequence CTGCTCAGCAGGGTGTGCCAGGCCCGAGGGAGCACCCTGGACAGCCTGAGGACAGCCCCGAGGCTGAGGCCTCCACCCTGGATGTGTTCACGGAGAGGCTGCCGCCCAGCGGGAGGATCACCAAGACAGAGTCCCTTGTCATCCCCTCCACCA
CircID chr14:105380891|105381099
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence LERPQHGCGFHGRLQARLCSAGCARPEGAPWTA
Nucleotide Sequence CTGGAGAGGCCGCAGCACGGGTGTGGTTTCCACGGGAGGCTCCAGGCCCGTCTCTGCTCAGCAGGGTGTGCCAGGCCCGAGGGAGCACCCTGGACAGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab