CircRNA Information

General Information
circRNA Basic Information
CircID chr14:105468987|105469197
Strand +
CircType exon
Host Gene ENSG00000182979.16;
Algorism CIRI2;
Sequence CTCCCTGCACAGGGGCCGGGGCTGTCCACCCACTTGCCTGCCGTGCCGAGACAAGCAAAGCCTCGCAAGGCTGTCAGTCCAGCAGCGGCACAAGCCCCTCTGCAGGGCAGCCACGCTGTGGCCGGCACTGCCCCACCAGGAGGCCGGGCTTTTTCCTAAGGCTCTGAGAGAGCCGCCAGCCCCGGCCAGAAACAGGTCACCACCCACTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:105468987|105469197 hsa-miR-34a-5p 0 0 1
chr14:105468987|105469197 hsa-miR-34a-3p 0 0 1
chr14:105468987|105469197 hsa-miR-422a 0 1 1
chr14:105468987|105469197 hsa-miR-449a 0 0 1
chr14:105468987|105469197 hsa-miR-564 0 0 1
chr14:105468987|105469197 hsa-miR-604 0 0 1
chr14:105468987|105469197 hsa-miR-631 0 0 1
chr14:105468987|105469197 hsa-miR-647 0 0 1
chr14:105468987|105469197 hsa-miR-449b-5p 0 0 1
chr14:105468987|105469197 hsa-miR-449b-3p 0 0 1
chr14:105468987|105469197 hsa-miR-874-5p 0 0 1
chr14:105468987|105469197 hsa-miR-874-3p 0 0 1
chr14:105468987|105469197 hsa-miR-541-5p 0 0 1
chr14:105468987|105469197 hsa-miR-541-3p 0 0 1
chr14:105468987|105469197 hsa-miR-1287-5p 0 0 1
chr14:105468987|105469197 hsa-miR-1287-3p 0 0 1
chr14:105468987|105469197 hsa-miR-1293 0 0 1
chr14:105468987|105469197 hsa-miR-1288-5p 0 0 1
chr14:105468987|105469197 hsa-miR-1288-3p 0 0 1
chr14:105468987|105469197 hsa-miR-1307-5p 0 0 1
chr14:105468987|105469197 hsa-miR-1307-3p 0 0 1
chr14:105468987|105469197 hsa-miR-486-3p 0 0 1
chr14:105468987|105469197 hsa-miR-146b-3p 0 0 1
chr14:105468987|105469197 hsa-miR-423-5p 0 0 1
chr14:105468987|105469197 hsa-miR-654-5p 0 0 1
chr14:105468987|105469197 hsa-miR-34c-5p 0 0 1
chr14:105468987|105469197 hsa-miR-378 0 0 1
chr14:105468987|105469197 hsa-miR-1269 0 0 1
chr14:105468987|105469197 hsa-miR-371-3p 0 0 1
chr14:105468987|105469197 hsa-miR-663a 1 0 0
chr14:105468987|105469197 hsa-miR-762 1 0 0
chr14:105468987|105469197 hsa-miR-760 1 0 0
chr14:105468987|105469197 hsa-miR-1269a 0 1 0
chr14:105468987|105469197 hsa-miR-1469 1 0 0
chr14:105468987|105469197 hsa-miR-1538 1 1 0
chr14:105468987|105469197 hsa-miR-3183 1 0 0
chr14:105468987|105469197 hsa-miR-3188 1 1 0
chr14:105468987|105469197 hsa-miR-3196 1 0 0
chr14:105468987|105469197 hsa-miR-378c 0 1 0
chr14:105468987|105469197 hsa-miR-4269 1 0 0
chr14:105468987|105469197 hsa-miR-378e 0 1 0
chr14:105468987|105469197 hsa-miR-378f 0 1 0
chr14:105468987|105469197 hsa-miR-4439 0 1 0
chr14:105468987|105469197 hsa-miR-4456 0 1 0
chr14:105468987|105469197 hsa-miR-4508 0 1 0
chr14:105468987|105469197 hsa-miR-4513 0 1 0
chr14:105468987|105469197 hsa-miR-1269b 0 1 0
chr14:105468987|105469197 hsa-miR-4526 0 1 0
chr14:105468987|105469197 hsa-miR-378i 0 1 0
chr14:105468987|105469197 hsa-miR-4651 1 0 0
chr14:105468987|105469197 hsa-miR-4741 1 0 0
chr14:105468987|105469197 hsa-miR-5087 0 1 0
chr14:105468987|105469197 hsa-miR-6081 1 1 0
chr14:105468987|105469197 hsa-miR-370-3p 1 0 0
chr14:105468987|105469197 hsa-miR-6799-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6089 1 0 0
chr14:105468987|105469197 hsa-miR-4722-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6727-5p 1 1 0
chr14:105468987|105469197 hsa-miR-3622b-5p 1 0 0
chr14:105468987|105469197 hsa-miR-3151-5p 0 1 0
chr14:105468987|105469197 hsa-miR-6748-5p 0 1 0
chr14:105468987|105469197 hsa-miR-6793-5p 1 0 0
chr14:105468987|105469197 hsa-miR-185-3p 0 1 0
chr14:105468987|105469197 hsa-miR-6732-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6821-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6786-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6763-3p 1 0 0
chr14:105468987|105469197 hsa-miR-4787-5p 1 0 0
chr14:105468987|105469197 hsa-miR-3158-5p 0 1 0
chr14:105468987|105469197 hsa-miR-194-3p 0 1 0
chr14:105468987|105469197 hsa-miR-4740-5p 0 1 0
chr14:105468987|105469197 hsa-miR-1225-5p 1 0 0
chr14:105468987|105469197 hsa-miR-4707-5p 0 1 0
chr14:105468987|105469197 hsa-miR-4638-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6741-3p 0 1 0
chr14:105468987|105469197 hsa-miR-6856-3p 0 1 0
chr14:105468987|105469197 hsa-miR-6770-3p 0 1 0
chr14:105468987|105469197 hsa-miR-888-3p 0 1 0
chr14:105468987|105469197 hsa-miR-10400-5p 1 0 0
chr14:105468987|105469197 hsa-miR-1233-5p 1 0 0
chr14:105468987|105469197 hsa-miR-4763-3p 1 0 0
chr14:105468987|105469197 hsa-miR-6769b-5p 0 1 0
chr14:105468987|105469197 hsa-miR-6816-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6756-5p 1 0 0
chr14:105468987|105469197 hsa-miR-6813-5p 0 1 0
chr14:105468987|105469197 hsa-miR-5189-5p 1 0 0
chr14:105468987|105469197 hsa-miR-328-5p 1 0 0
chr14:105468987|105469197 hsa-miR-449c-5p 1 0 0
chr14:105468987|105469197 hsa-miR-1266-5p 0 1 0
chr14:105468987|105469197 hsa-miR-6511b-5p 0 1 0
chr14:105468987|105469197 hsa-miR-10396a-3p 1 1 0
chr14:105468987|105469197 hsa-miR-10396b-3p 1 1 0
chr14:105468987|105469197 hsa-miR-6799-3p 0 1 0
chr14:105468987|105469197 hsa-miR-378a-3p 0 1 0
chr14:105468987|105469197 hsa-miR-3184-5p 0 1 0
chr14:105468987|105469197 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:105468987|105469197
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MSTHLPAVPRQAKPRKAVSPAAAQAPLQGSHAVAGTAPPGGRAFS
Nucleotide Sequence CTGTCCACCCACTTGCCTGCCGTGCCGAGACAAGCAAAGCCTCGCAAGGCTGTCAGTCCAGCAGCGGCACAAGCCCCTCTGCAGGGCAGCCACGCTGTGGCCGGCACTGCCCCACCAGGAGGCCGGGCTTTTTCCTAA
CircID chr14:105468987|105469197
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MHRGRGCPPTCLPCRDKQSLARLSVQQRHKPLCRAATLWPALPHQEAGLFPKALREPPAPARNRSPPTA
Nucleotide Sequence CTGCACAGGGGCCGGGGCTGTCCACCCACTTGCCTGCCGTGCCGAGACAAGCAAAGCCTCGCAAGGCTGTCAGTCCAGCAGCGGCACAAGCCCCTCTGCAGGGCAGCCACGCTGTGGCCGGCACTGCCCCACCAGGAGGCCGGGCTTTTTCCTAAGGCTCTGAGAGAGCCGCCAGCCCCGGCCAGAAACAGGTCACCACCCACTGCC
CircID chr14:105468987|105469197
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MFLAGAGGSLRALGKSPASWWGSAGHSVAALQRGLCRCWTDSLARLCLSRHGRQVGGQPRPLCRE
Nucleotide Sequence CTGTTTCTGGCCGGGGCTGGCGGCTCTCTCAGAGCCTTAGGAAAAAGCCCGGCCTCCTGGTGGGGCAGTGCCGGCCACAGCGTGGCTGCCCTGCAGAGGGGCTTGTGCCGCTGCTGGACTGACAGCCTTGCGAGGCTTTGCTTGTCTCGGCACGGCAGGCAAGTGGGTGGACAGCCCCGGCCCCTGTGCAGGGAG
CircID chr14:105468987|105469197
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MPCRGACAAAGLTALRGFACLGTAGKWVDSPGPCAG
Nucleotide Sequence CTGCCCTGCAGAGGGGCTTGTGCCGCTGCTGGACTGACAGCCTTGCGAGGCTTTGCTTGTCTCGGCACGGCAGGCAAGTGGGTGGACAGCCCCGGCCCCTGTGCAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab