CircRNA Information

General Information
circRNA Basic Information
CircID chr14:105625101|105625377
Strand -
CircType exon
Host Gene ENSG00000211892.3;
Algorism CIRI2;
Sequence CTCGGGGTCTTCCTGGCTCACGTCCACCACCACGCACGTGACCTCAGGGGTCCGGGAGATCATGAGAGTGTCCTTGGGTTTTGGGGGGAACAGGAAGACTGATGGTCCCCCCAGGAACTCAGGTGCTGAGGAAGAGATGGAGGTGGATGCGTCAGCACCCGGCTGGGGCCTGTCCCTGGATGCAGGCTACTCTAGGGCACCTGTCCCGCCTTGAGCTGGAGGGCGAGGCCTGGGTTGGCTTACCTGGGCATGATGGGCATGGGGGACCATATTTGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:105625101|105625377 hsa-miR-433-5p 0 0 1
chr14:105625101|105625377 hsa-miR-433-3p 0 0 1
chr14:105625101|105625377 hsa-miR-552-5p 0 0 1
chr14:105625101|105625377 hsa-miR-552-3p 0 0 1
chr14:105625101|105625377 hsa-miR-596 1 0 1
chr14:105625101|105625377 hsa-miR-622 0 0 1
chr14:105625101|105625377 hsa-miR-637 0 0 1
chr14:105625101|105625377 hsa-miR-766-5p 0 0 1
chr14:105625101|105625377 hsa-miR-766-3p 0 0 1
chr14:105625101|105625377 hsa-miR-1236-5p 0 0 1
chr14:105625101|105625377 hsa-miR-1236-3p 0 0 1
chr14:105625101|105625377 hsa-miR-1249-5p 0 0 1
chr14:105625101|105625377 hsa-miR-1249-3p 0 0 1
chr14:105625101|105625377 hsa-miR-1197 0 0 1
chr14:105625101|105625377 hsa-miR-324-5p 0 0 1
chr14:105625101|105625377 hsa-miR-361-3p 0 0 1
chr14:105625101|105625377 hsa-miR-876-3p 0 0 1
chr14:105625101|105625377 hsa-miR-628-5p 0 0 1
chr14:105625101|105625377 hsa-miR-125a-5p 0 0 1
chr14:105625101|105625377 hsa-miR-323-5p 0 0 1
chr14:105625101|105625377 hsa-miR-125b 0 0 1
chr14:105625101|105625377 hsa-miR-7 0 0 1
chr14:105625101|105625377 hsa-miR-663a 1 0 0
chr14:105625101|105625377 hsa-miR-1268b 1 0 0
chr14:105625101|105625377 hsa-miR-8089 1 0 0
chr14:105625101|105625377 hsa-miR-6727-5p 1 0 0
chr14:105625101|105625377 hsa-miR-615-5p 1 0 0
chr14:105625101|105625377 hsa-miR-1226-5p 1 0 0
chr14:105625101|105625377 hsa-miR-1224-3p 1 0 0
chr14:105625101|105625377 hsa-miR-7151-5p 1 0 0
chr14:105625101|105625377 hsa-miR-4763-3p 1 0 0
chr14:105625101|105625377 hsa-miR-6743-5p 1 0 0
chr14:105625101|105625377 hsa-miR-7111-5p 1 0 0
chr14:105625101|105625377 hsa-miR-328-5p 1 0 0
chr14:105625101|105625377 hsa-miR-4749-5p 1 0 0
chr14:105625101|105625377 hsa-miR-6795-5p 1 0 0
chr14:105625101|105625377 hsa-miR-5195-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:105625101|105625377
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MAHVHHHARDLRGPGDHESVLGFWGEQED
Nucleotide Sequence CTGGCTCACGTCCACCACCACGCACGTGACCTCAGGGGTCCGGGAGATCATGAGAGTGTCCTTGGGTTTTGGGGGGAACAGGAAGACTGA
CircID chr14:105625101|105625377
ORF Type ORF2
Protein Length 50
Nucleotide Length 153
Protein Sequence MRVSLGFGGNRKTDGPPRNSGAEEEMEVDASAPGWGLSLDAGYSRAPVPP
Nucleotide Sequence ATGAGAGTGTCCTTGGGTTTTGGGGGGAACAGGAAGACTGATGGTCCCCCCAGGAACTCAGGTGCTGAGGAAGAGATGGAGGTGGATGCGTCAGCACCCGGCTGGGGCCTGTCCCTGGATGCAGGCTACTCTAGGGCACCTGTCCCGCCTTGA
CircID chr14:105625101|105625377
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MGGTGRLMVPPGTQVLRKRWRWMRQHPAGACPWMQATLGHLSRLELEGEAWVGLPGHDGHGGPYL
Nucleotide Sequence TTGGGGGGAACAGGAAGACTGATGGTCCCCCCAGGAACTCAGGTGCTGAGGAAGAGATGGAGGTGGATGCGTCAGCACCCGGCTGGGGCCTGTCCCTGGATGCAGGCTACTCTAGGGCACCTGTCCCGCCTTGAGCTGGAGGGCGAGGCCTGGGTTGGCTTACCTGGGCATGATGGGCATGGGGGACCATATTTG
CircID chr14:105625101|105625377
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MVPHAHHAQVSQPRPRPPAQGGTGALE
Nucleotide Sequence ATGGTCCCCCATGCCCATCATGCCCAGGTAAGCCAACCCAGGCCTCGCCCTCCAGCTCAAGGCGGGACAGGTGCCCTAGAGTAG
CircID chr14:105625101|105625377
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPE
Nucleotide Sequence CTGGGGGGACCATCAGTCTTCCTGTTCCCCCCAAAACCCAAGGACACTCTCATGATCTCCCGGACCCCTGAGGTCACGTGCGTGGTGGTGGACGTGAGCCAGGAAGACCCCGAG
CircID chr14:105625101|105625377
ORF Type ORF6
Protein Length 41
Nucleotide Length 126
Protein Sequence MHPGTGPSRVLTHPPPSLPQHLSSWGDHQSSCSPQNPRTLS
Nucleotide Sequence CTGCATCCAGGGACAGGCCCCAGCCGGGTGCTGACGCATCCACCTCCATCTCTTCCTCAGCACCTGAGTTCCTGGGGGGACCATCAGTCTTCCTGTTCCCCCCAAAACCCAAGGACACTCTCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab