CircRNA Information

General Information
circRNA Basic Information
CircID chr14:106737376|106737607
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCAGCCCCAGACTGTACCAGCTGGACCTCGGCGTGGGTGCCTGTGGAGAAGAGAAAGGAGTGGATGAGACACCACTTAACTGGACCCAGTCCCCTCATCAGCCCTGGAACTAAGGATTCTCTTACCTGTAGCTGCTGCCACCAAGAGGAGGATCCTCCAGGTGCAGTCCATGGTGAGGTGCTGCTCTCTGGGGGCTTCTGTAGGGGAGGGATGTGGCTGTTGTGTGATGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:106737376|106737607 hsa-miR-15a-5p 0 0 1
chr14:106737376|106737607 hsa-miR-15a-3p 0 0 1
chr14:106737376|106737607 hsa-miR-15b-5p 0 0 1
chr14:106737376|106737607 hsa-miR-15b-3p 0 0 1
chr14:106737376|106737607 hsa-miR-195-5p 0 0 1
chr14:106737376|106737607 hsa-miR-195-3p 0 0 1
chr14:106737376|106737607 hsa-miR-377-5p 0 0 1
chr14:106737376|106737607 hsa-miR-377-3p 0 0 1
chr14:106737376|106737607 hsa-miR-424-5p 0 0 1
chr14:106737376|106737607 hsa-miR-424-3p 0 0 1
chr14:106737376|106737607 hsa-miR-497-5p 0 0 1
chr14:106737376|106737607 hsa-miR-497-3p 0 0 1
chr14:106737376|106737607 hsa-miR-552-5p 0 0 1
chr14:106737376|106737607 hsa-miR-552-3p 0 0 1
chr14:106737376|106737607 hsa-miR-619-5p 0 0 1
chr14:106737376|106737607 hsa-miR-619-3p 0 0 1
chr14:106737376|106737607 hsa-miR-622 0 0 1
chr14:106737376|106737607 hsa-miR-637 0 0 1
chr14:106737376|106737607 hsa-miR-646 0 1 1
chr14:106737376|106737607 hsa-miR-765 0 0 1
chr14:106737376|106737607 hsa-miR-942-5p 0 0 1
chr14:106737376|106737607 hsa-miR-942-3p 0 0 1
chr14:106737376|106737607 hsa-miR-1236-5p 0 0 1
chr14:106737376|106737607 hsa-miR-1236-3p 0 0 1
chr14:106737376|106737607 hsa-miR-1288-5p 0 0 1
chr14:106737376|106737607 hsa-miR-1288-3p 0 0 1
chr14:106737376|106737607 hsa-miR-145-5p 0 0 1
chr14:106737376|106737607 hsa-miR-885-3p 0 0 1
chr14:106737376|106737607 hsa-miR-423-5p 0 0 1
chr14:106737376|106737607 hsa-miR-361-3p 0 0 1
chr14:106737376|106737607 hsa-miR-1207-3p 0 0 1
chr14:106737376|106737607 hsa-miR-483-3p 0 1 1
chr14:106737376|106737607 hsa-miR-515-5p 0 0 1
chr14:106737376|106737607 hsa-miR-16 0 0 1
chr14:106737376|106737607 hsa-miR-1269 0 0 1
chr14:106737376|106737607 hsa-miR-500 0 0 1
chr14:106737376|106737607 hsa-miR-662 1 1 0
chr14:106737376|106737607 hsa-miR-762 1 0 0
chr14:106737376|106737607 hsa-miR-4254 0 1 0
chr14:106737376|106737607 hsa-miR-4269 0 1 0
chr14:106737376|106737607 hsa-miR-3943 1 1 0
chr14:106737376|106737607 hsa-miR-4449 1 0 0
chr14:106737376|106737607 hsa-miR-4467 1 0 0
chr14:106737376|106737607 hsa-miR-4656 0 1 0
chr14:106737376|106737607 hsa-miR-5092 0 1 0
chr14:106737376|106737607 hsa-miR-5193 0 1 0
chr14:106737376|106737607 hsa-miR-6072 0 1 0
chr14:106737376|106737607 hsa-miR-6081 1 0 0
chr14:106737376|106737607 hsa-miR-8075 0 1 0
chr14:106737376|106737607 hsa-miR-150-3p 0 1 0
chr14:106737376|106737607 hsa-miR-6749-3p 1 0 0
chr14:106737376|106737607 hsa-miR-149-5p 1 0 0
chr14:106737376|106737607 hsa-miR-7160-5p 1 1 0
chr14:106737376|106737607 hsa-miR-659-3p 1 0 0
chr14:106737376|106737607 hsa-miR-3130-3p 0 1 0
chr14:106737376|106737607 hsa-miR-6765-3p 0 1 0
chr14:106737376|106737607 hsa-miR-5006-5p 1 0 0
chr14:106737376|106737607 hsa-miR-6784-5p 1 0 0
chr14:106737376|106737607 hsa-miR-6753-5p 1 0 0
chr14:106737376|106737607 hsa-miR-6823-5p 0 1 0
chr14:106737376|106737607 hsa-miR-6870-3p 0 1 0
chr14:106737376|106737607 hsa-miR-4652-5p 0 1 0
chr14:106737376|106737607 hsa-miR-525-5p 0 1 0
chr14:106737376|106737607 hsa-miR-6785-3p 1 0 0
chr14:106737376|106737607 hsa-miR-508-5p 1 0 0
chr14:106737376|106737607 hsa-miR-7112-3p 1 0 0
chr14:106737376|106737607 hsa-miR-500a-5p 0 1 0
chr14:106737376|106737607 hsa-miR-449b-3p 0 1 0
chr14:106737376|106737607 hsa-miR-4709-5p 0 1 0
chr14:106737376|106737607 hsa-miR-500a-3p 0 1 0
chr14:106737376|106737607 hsa-miR-16-5p 0 1 0
chr14:106737376|106737607 hsa-miR-885-5p 1 0 0
chr14:106737376|106737607 hsa-miR-10400-5p 1 0 0
chr14:106737376|106737607 hsa-miR-4685-5p 1 1 0
chr14:106737376|106737607 hsa-miR-6858-5p 1 0 0
chr14:106737376|106737607 hsa-miR-3199 0 1 0
chr14:106737376|106737607 hsa-miR-520a-5p 0 1 0
chr14:106737376|106737607 hsa-miR-6511a-3p 0 1 0
chr14:106737376|106737607 hsa-miR-6837-5p 0 1 0
chr14:106737376|106737607 hsa-miR-485-3p 1 0 0
chr14:106737376|106737607 hsa-miR-6511b-3p 0 1 0
chr14:106737376|106737607 hsa-miR-3619-5p 1 0 0
chr14:106737376|106737607 hsa-miR-519a-2-5p 0 1 0
chr14:106737376|106737607 hsa-miR-520b-5p 0 1 0
chr14:106737376|106737607 hsa-miR-323a-3p 1 0 0
chr14:106737376|106737607 hsa-miR-7153-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:106737376|106737607
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MYQLDLGVGACGEEKGVDETPLNWTQSPHQPWN
Nucleotide Sequence CTGTACCAGCTGGACCTCGGCGTGGGTGCCTGTGGAGAAGAGAAAGGAGTGGATGAGACACCACTTAACTGGACCCAGTCCCCTCATCAGCCCTGGAACTAA
CircID chr14:106737376|106737607
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MRHHLTGPSPLISPGTKDSLTCSCCHQEEDPPGAVHGEVLLSGGFCRGGMWLLCDA
Nucleotide Sequence ATGAGACACCACTTAACTGGACCCAGTCCCCTCATCAGCCCTGGAACTAAGGATTCTCTTACCTGTAGCTGCTGCCACCAAGAGGAGGATCCTCCAGGTGCAGTCCATGGTGAGGTGCTGCTCTCTGGGGGCTTCTGTAGGGGAGGGATGTGGCTGTTGTGTGATGCT
CircID chr14:106737376|106737607
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MDPVPSSALELRILLPVAAATKRRILQVQSMVRCCSLGASVGEGCGCCVM
Nucleotide Sequence CTGGACCCAGTCCCCTCATCAGCCCTGGAACTAAGGATTCTCTTACCTGTAGCTGCTGCCACCAAGAGGAGGATCCTCCAGGTGCAGTCCATGGTGAGGTGCTGCTCTCTGGGGGCTTCTGTAGGGGAGGGATGTGGCTGTTGTGTGATG
CircID chr14:106737376|106737607
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MDCTWRILLLVAAATGKRILSSRADEGTGSS
Nucleotide Sequence ATGGACTGCACCTGGAGGATCCTCCTCTTGGTGGCAGCAGCTACAGGTAAGAGAATCCTTAGTTCCAGGGCTGATGAGGGGACTGGGTCCAGTTAA
CircID chr14:106737376|106737607
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MMRGLGPVKWCLIHSFLFSTGTHAEVQLVQSGAE
Nucleotide Sequence CTGATGAGGGGACTGGGTCCAGTTAAGTGGTGTCTCATCCACTCCTTTCTCTTCTCCACAGGCACCCACGCCGAGGTCCAGCTGGTACAGTCTGGGGCTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab