CircRNA Information

General Information
circRNA Basic Information
CircID chr14:20371233|20371597
Strand -
CircType exon
Host Gene ENSG00000129566.11;
Algorism CIRI2;
Sequence TCCAGGATCCTTGGGCTGCAGGACAAATATGCCATACTCCTTGTGGGTGGACAATATCATAGGATTTTCTGTATAGCTGCTCCTGGTTTGTGAGAAAGGAATAGGTTGAGCTCAGGATTTAAAGAGAGGTAAAGAGAAGAACACCTCTCTTTAAGACTCCAGAGTTTTCTTCTAAGTTAGACTCAACCTCAGGATAACCACTAACTCAGGTTTCCTTTTTCCCCAGCTCAGGAGGAAATGGCATTTTGGATCTTACCAGATTTCAGATGGAGCATCCCCTGGCTTCATGCAAAGTAACTTCAAATCTGCTTTGGCCAAGATGAGAAAGTGACCATCAGGAGCCCAATCCAGACTTGTCAGCACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:20371233|20371597 hsa-miR-183-5p 0 0 1
chr14:20371233|20371597 hsa-miR-183-3p 0 0 1
chr14:20371233|20371597 hsa-miR-558 0 0 1
chr14:20371233|20371597 hsa-miR-573 0 0 1
chr14:20371233|20371597 hsa-miR-583 0 0 1
chr14:20371233|20371597 hsa-miR-588 0 0 1
chr14:20371233|20371597 hsa-miR-605-5p 0 0 1
chr14:20371233|20371597 hsa-miR-605-3p 0 0 1
chr14:20371233|20371597 hsa-miR-627-5p 0 0 1
chr14:20371233|20371597 hsa-miR-627-3p 0 0 1
chr14:20371233|20371597 hsa-miR-646 0 0 1
chr14:20371233|20371597 hsa-miR-665 0 0 1
chr14:20371233|20371597 hsa-miR-924 0 0 1
chr14:20371233|20371597 hsa-miR-942-5p 0 0 1
chr14:20371233|20371597 hsa-miR-942-3p 0 0 1
chr14:20371233|20371597 hsa-miR-1229-5p 0 0 1
chr14:20371233|20371597 hsa-miR-1229-3p 0 0 1
chr14:20371233|20371597 hsa-miR-1238-5p 0 0 1
chr14:20371233|20371597 hsa-miR-1238-3p 0 0 1
chr14:20371233|20371597 hsa-miR-1200 0 1 1
chr14:20371233|20371597 hsa-miR-1276 0 0 1
chr14:20371233|20371597 hsa-miR-1284 0 0 1
chr14:20371233|20371597 hsa-miR-140-5p 0 1 1
chr14:20371233|20371597 hsa-miR-1184 0 0 1
chr14:20371233|20371597 hsa-miR-1289 0 0 1
chr14:20371233|20371597 hsa-miR-330-3p 0 0 1
chr14:20371233|20371597 hsa-miR-628-5p 0 0 1
chr14:20371233|20371597 hsa-miR-342-3p 0 0 1
chr14:20371233|20371597 hsa-miR-516b 0 0 1
chr14:20371233|20371597 hsa-miR-762 1 0 0
chr14:20371233|20371597 hsa-miR-2110 0 1 0
chr14:20371233|20371597 hsa-miR-548s 0 1 0
chr14:20371233|20371597 hsa-miR-544b 0 1 0
chr14:20371233|20371597 hsa-miR-3183 0 1 0
chr14:20371233|20371597 hsa-miR-3907 1 0 0
chr14:20371233|20371597 hsa-miR-4487 0 1 0
chr14:20371233|20371597 hsa-miR-4490 0 1 0
chr14:20371233|20371597 hsa-miR-4496 0 1 0
chr14:20371233|20371597 hsa-miR-4507 1 0 0
chr14:20371233|20371597 hsa-miR-1587 1 0 0
chr14:20371233|20371597 hsa-miR-4656 1 0 0
chr14:20371233|20371597 hsa-miR-4682 0 1 0
chr14:20371233|20371597 hsa-miR-378j 0 1 0
chr14:20371233|20371597 hsa-miR-8060 0 1 0
chr14:20371233|20371597 hsa-miR-8089 1 1 0
chr14:20371233|20371597 hsa-miR-3150a-3p 1 0 0
chr14:20371233|20371597 hsa-miR-7851-3p 1 0 0
chr14:20371233|20371597 hsa-miR-4709-3p 0 1 0
chr14:20371233|20371597 hsa-miR-520g-3p 0 1 0
chr14:20371233|20371597 hsa-miR-6798-5p 1 0 0
chr14:20371233|20371597 hsa-miR-486-3p 1 0 0
chr14:20371233|20371597 hsa-miR-4786-3p 1 0 0
chr14:20371233|20371597 hsa-miR-6809-3p 0 1 0
chr14:20371233|20371597 hsa-miR-2355-3p 0 1 0
chr14:20371233|20371597 hsa-miR-6715a-3p 0 1 0
chr14:20371233|20371597 hsa-miR-4680-5p 0 1 0
chr14:20371233|20371597 hsa-miR-6768-3p 0 1 0
chr14:20371233|20371597 hsa-miR-3670 1 1 0
chr14:20371233|20371597 hsa-miR-5584-3p 0 1 0
chr14:20371233|20371597 hsa-miR-3680-3p 0 1 0
chr14:20371233|20371597 hsa-miR-514a-5p 0 1 0
chr14:20371233|20371597 hsa-miR-4668-3p 0 1 0
chr14:20371233|20371597 hsa-miR-513b-5p 0 1 0
chr14:20371233|20371597 hsa-miR-4670-3p 0 1 0
chr14:20371233|20371597 hsa-miR-6756-5p 1 0 0
chr14:20371233|20371597 hsa-miR-3620-5p 1 0 0
chr14:20371233|20371597 hsa-miR-4726-5p 1 0 0
chr14:20371233|20371597 hsa-miR-3198 0 1 0
chr14:20371233|20371597 hsa-miR-4700-5p 0 1 0
chr14:20371233|20371597 hsa-miR-4716-3p 1 0 0
chr14:20371233|20371597 hsa-miR-4667-5p 1 1 0
chr14:20371233|20371597 hsa-miR-342-5p 0 1 0
chr14:20371233|20371597 hsa-miR-10400-3p 1 0 0
chr14:20371233|20371597 hsa-miR-323b-5p 1 0 0
chr14:20371233|20371597 hsa-miR-487b-5p 0 1 0
chr14:20371233|20371597 hsa-miR-487a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:20371233|20371597
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MQDKYAILLVGGQYHRIFCIAAPGL
Nucleotide Sequence CTGCAGGACAAATATGCCATACTCCTTGTGGGTGGACAATATCATAGGATTTTCTGTATAGCTGCTCCTGGTTTGTGA
CircID chr14:20371233|20371597
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MDLTRFQMEHPLASCKVTSNLLWPR
Nucleotide Sequence TTGGATCTTACCAGATTTCAGATGGAGCATCCCCTGGCTTCATGCAAAGTAACTTCAAATCTGCTTTGGCCAAGATGA
CircID chr14:20371233|20371597
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MSSTYSFLTNQEQLYRKSYDIVHPQGVWHICPAAQGSW
Nucleotide Sequence CTGAGCTCAACCTATTCCTTTCTCACAAACCAGGAGCAGCTATACAGAAAATCCTATGATATTGTCCACCCACAAGGAGTATGGCATATTTGTCCTGCAGCCCAAGGATCCTGG
CircID chr14:20371233|20371597
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MTSLDWAPDGHFLILAKADLKLLCMKPGDAPSEIW
Nucleotide Sequence CTGACAAGTCTGGATTGGGCTCCTGATGGTCACTTTCTCATCTTGGCCAAAGCAGATTTGAAGTTACTTTGCATGAAGCCAGGGGATGCTCCATCTGAAATCTGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab