CircRNA Information

General Information
circRNA Basic Information
CircID chr14:20477269|20477541
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGCCTTGTCAGCATGGAGTGAATGGAGAGTGTGGCTGCAGATGTTAGAGAAGAGTAGGAGAGAAAAGGCAAACAAGAGGAAATATAATTAGGGCTTTGGTAAGGAAGTGGGAACTAAGGAAGAGGCTAACCAGTGAACTAATTCAGATATGATCAAATAAACAGGAAATGAAACAATCAGAAGGCAAGGGAGAGAGGCAGGACCAGCCTGACAGAAGTGGCAATCAAGTGCCAGAAGTTAACTTTTCTTTACCATCTCATAACCTCTTTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:20477269|20477541 hsa-miR-143-5p 0 0 1
chr14:20477269|20477541 hsa-miR-143-3p 0 0 1
chr14:20477269|20477541 hsa-miR-136-5p 0 0 1
chr14:20477269|20477541 hsa-miR-136-3p 0 0 1
chr14:20477269|20477541 hsa-miR-154-5p 0 0 1
chr14:20477269|20477541 hsa-miR-154-3p 0 0 1
chr14:20477269|20477541 hsa-miR-186-5p 0 0 1
chr14:20477269|20477541 hsa-miR-186-3p 0 0 1
chr14:20477269|20477541 hsa-miR-484 0 0 1
chr14:20477269|20477541 hsa-miR-579-5p 0 0 1
chr14:20477269|20477541 hsa-miR-579-3p 0 0 1
chr14:20477269|20477541 hsa-miR-583 0 0 1
chr14:20477269|20477541 hsa-miR-623 1 0 1
chr14:20477269|20477541 hsa-miR-942-5p 0 0 1
chr14:20477269|20477541 hsa-miR-942-3p 0 0 1
chr14:20477269|20477541 hsa-miR-944 0 0 1
chr14:20477269|20477541 hsa-miR-1236-5p 0 0 1
chr14:20477269|20477541 hsa-miR-1236-3p 0 0 1
chr14:20477269|20477541 hsa-miR-1237-5p 0 0 1
chr14:20477269|20477541 hsa-miR-1237-3p 0 0 1
chr14:20477269|20477541 hsa-miR-1238-5p 0 0 1
chr14:20477269|20477541 hsa-miR-1238-3p 0 0 1
chr14:20477269|20477541 hsa-miR-1205 0 0 1
chr14:20477269|20477541 hsa-miR-1184 0 0 1
chr14:20477269|20477541 hsa-miR-188-3p 0 0 1
chr14:20477269|20477541 hsa-miR-628-5p 0 0 1
chr14:20477269|20477541 hsa-miR-483-3p 0 0 1
chr14:20477269|20477541 hsa-miR-508-3p 0 0 1
chr14:20477269|20477541 hsa-miR-1260 0 0 1
chr14:20477269|20477541 hsa-miR-1826 0 0 1
chr14:20477269|20477541 hsa-miR-219-5p 0 0 1
chr14:20477269|20477541 hsa-miR-1282 1 1 0
chr14:20477269|20477541 hsa-miR-4533 0 1 0
chr14:20477269|20477541 hsa-miR-4734 1 0 0
chr14:20477269|20477541 hsa-miR-5047 1 0 0
chr14:20477269|20477541 hsa-miR-11401 1 0 0
chr14:20477269|20477541 hsa-miR-12127 0 1 0
chr14:20477269|20477541 hsa-miR-511-5p 1 0 0
chr14:20477269|20477541 hsa-miR-6747-3p 0 1 0
chr14:20477269|20477541 hsa-miR-6881-3p 0 1 0
chr14:20477269|20477541 hsa-miR-6728-5p 1 0 0
chr14:20477269|20477541 hsa-miR-6875-3p 1 0 0
chr14:20477269|20477541 hsa-miR-138-1-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6873-3p 1 1 0
chr14:20477269|20477541 hsa-miR-7110-3p 1 1 0
chr14:20477269|20477541 hsa-miR-1915-5p 1 1 0
chr14:20477269|20477541 hsa-miR-6845-3p 1 0 0
chr14:20477269|20477541 hsa-miR-877-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6868-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6882-3p 1 1 0
chr14:20477269|20477541 hsa-miR-6716-3p 1 0 0
chr14:20477269|20477541 hsa-miR-4713-5p 1 0 0
chr14:20477269|20477541 hsa-miR-4436b-5p 1 1 0
chr14:20477269|20477541 hsa-miR-7109-3p 1 0 0
chr14:20477269|20477541 hsa-miR-3944-3p 1 1 0
chr14:20477269|20477541 hsa-miR-6803-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6514-3p 1 0 0
chr14:20477269|20477541 hsa-miR-7113-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6878-3p 1 1 0
chr14:20477269|20477541 hsa-miR-4743-3p 0 1 0
chr14:20477269|20477541 hsa-miR-6818-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6809-3p 1 1 0
chr14:20477269|20477541 hsa-miR-6780a-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6830-3p 0 1 0
chr14:20477269|20477541 hsa-miR-6739-3p 1 0 0
chr14:20477269|20477541 hsa-miR-7156-3p 0 1 0
chr14:20477269|20477541 hsa-miR-7152-3p 0 1 0
chr14:20477269|20477541 hsa-miR-6895-3p 1 1 0
chr14:20477269|20477541 hsa-miR-4632-3p 1 0 0
chr14:20477269|20477541 hsa-miR-653-3p 0 1 0
chr14:20477269|20477541 hsa-miR-502-5p 1 1 0
chr14:20477269|20477541 hsa-miR-130b-5p 1 0 0
chr14:20477269|20477541 hsa-miR-6761-3p 1 0 0
chr14:20477269|20477541 hsa-miR-3156-3p 0 1 0
chr14:20477269|20477541 hsa-miR-4423-5p 0 1 0
chr14:20477269|20477541 hsa-miR-6865-5p 1 0 0
chr14:20477269|20477541 hsa-miR-6851-5p 1 0 0
chr14:20477269|20477541 hsa-miR-320a-5p 1 0 0
chr14:20477269|20477541 hsa-miR-4685-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6877-3p 1 1 0
chr14:20477269|20477541 hsa-miR-2682-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6756-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6829-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6819-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6823-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6744-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6781-3p 1 1 0
chr14:20477269|20477541 hsa-miR-6833-3p 1 1 0
chr14:20477269|20477541 hsa-miR-4659b-3p 1 1 0
chr14:20477269|20477541 hsa-miR-550a-3p 1 0 0
chr14:20477269|20477541 hsa-miR-6507-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:20477269|20477541
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MSAWSEWRVWLQMLEKSRREKANKRKYN
Nucleotide Sequence TTGTCAGCATGGAGTGAATGGAGAGTGTGGCTGCAGATGTTAGAGAAGAGTAGGAGAGAAAAGGCAAACAAGAGGAAATATAATTAG
CircID chr14:20477269|20477541
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MKQSEGKGERQDQPDRSGNQVPEVNFSLPSHNLFP
Nucleotide Sequence ATGAAACAATCAGAAGGCAAGGGAGAGAGGCAGGACCAGCCTGACAGAAGTGGCAATCAAGTGCCAGAAGTTAACTTTTCTTTACCATCTCATAACCTCTTTCCA
CircID chr14:20477269|20477541
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MALDCHFCQAGPASLPCLLIVSFPVYLIISELVHWLASSLVPTSLPKP
Nucleotide Sequence CTGGCACTTGATTGCCACTTCTGTCAGGCTGGTCCTGCCTCTCTCCCTTGCCTTCTGATTGTTTCATTTCCTGTTTATTTGATCATATCTGAATTAGTTCACTGGTTAGCCTCTTCCTTAGTTCCCACTTCCTTACCAAAGCCCTAA
CircID chr14:20477269|20477541
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MFAFSLLLFSNICSHTLHSLHADKA
Nucleotide Sequence TTGTTTGCCTTTTCTCTCCTACTCTTCTCTAACATCTGCAGCCACACTCTCCATTCACTCCATGCTGACAAGGCA
CircID chr14:20477269|20477541
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MPLLSGWSCLSPLPSDCFISCLFDHI
Nucleotide Sequence TTGCCACTTCTGTCAGGCTGGTCCTGCCTCTCTCCCTTGCCTTCTGATTGTTTCATTTCCTGTTTATTTGATCATATCTGA
CircID chr14:20477269|20477541
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MVSLFLSSHFLTKALIIFPLVCLFSPTLL
Nucleotide Sequence CTGGTTAGCCTCTTCCTTAGTTCCCACTTCCTTACCAAAGCCCTAATTATATTTCCTCTTGTTTGCCTTTTCTCTCCTACTCTTCTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab