CircRNA Information

General Information
circRNA Basic Information
CircID chr14:22876002|22876196
Strand +
CircType exon
Host Gene ENSG00000197324.7;
Algorism CIRI2;
Sequence CCACGTCTCATACACGCACTTCTCGTCCCGGCATCGGAAATTGCCAGGCTGGCAATGCCGACAGCGTCTCTCATCTGCTCCATCAGCACAGAAAGTCTGGTAGTTGCAGCGGTCAGCAGGCAGGTAGCAGGCTGTGGCACCAGAGGTGCCAGCAGCCCCACAGGGGAAGTGTCCAGGTGGGCAGCCTGGGCAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:22876002|22876196 hsa-miR-370-5p 0 0 1
chr14:22876002|22876196 hsa-miR-370-3p 0 0 1
chr14:22876002|22876196 hsa-miR-596 0 0 1
chr14:22876002|22876196 hsa-miR-619-5p 0 0 1
chr14:22876002|22876196 hsa-miR-619-3p 0 0 1
chr14:22876002|22876196 hsa-miR-891b 0 0 1
chr14:22876002|22876196 hsa-miR-1227-5p 0 0 1
chr14:22876002|22876196 hsa-miR-1227-3p 0 0 1
chr14:22876002|22876196 hsa-miR-1202 0 0 1
chr14:22876002|22876196 hsa-miR-1256 0 0 1
chr14:22876002|22876196 hsa-miR-139-3p 0 0 1
chr14:22876002|22876196 hsa-miR-491-5p 0 0 1
chr14:22876002|22876196 hsa-miR-1224-3p 0 0 1
chr14:22876002|22876196 hsa-miR-331-3p 0 0 1
chr14:22876002|22876196 hsa-miR-628-5p 0 0 1
chr14:22876002|22876196 hsa-miR-623 1 0 0
chr14:22876002|22876196 hsa-miR-1538 1 0 0
chr14:22876002|22876196 hsa-miR-320e 1 0 0
chr14:22876002|22876196 hsa-miR-4281 1 0 0
chr14:22876002|22876196 hsa-miR-4449 1 0 0
chr14:22876002|22876196 hsa-miR-4497 1 0 0
chr14:22876002|22876196 hsa-miR-4688 1 0 0
chr14:22876002|22876196 hsa-miR-6081 1 0 0
chr14:22876002|22876196 hsa-miR-8075 1 0 0
chr14:22876002|22876196 hsa-miR-8085 1 0 0
chr14:22876002|22876196 hsa-miR-12115 1 0 0
chr14:22876002|22876196 hsa-miR-4433b-3p 1 0 0
chr14:22876002|22876196 hsa-miR-4726-3p 1 0 0
chr14:22876002|22876196 hsa-miR-4433a-3p 1 0 0
chr14:22876002|22876196 hsa-miR-5187-5p 1 0 0
chr14:22876002|22876196 hsa-miR-6089 1 0 0
chr14:22876002|22876196 hsa-miR-3934-3p 1 0 0
chr14:22876002|22876196 hsa-miR-92b-5p 1 0 0
chr14:22876002|22876196 hsa-miR-6743-5p 1 0 0
chr14:22876002|22876196 hsa-miR-4649-5p 1 0 0
chr14:22876002|22876196 hsa-miR-4726-5p 1 0 0
chr14:22876002|22876196 hsa-miR-6729-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:22876002|22876196
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MAMPTASLICSISTESLVVAAVSRQVAGCGTRGASSPTGEVSRWAAWAV
Nucleotide Sequence CTGGCAATGCCGACAGCGTCTCTCATCTGCTCCATCAGCACAGAAAGTCTGGTAGTTGCAGCGGTCAGCAGGCAGGTAGCAGGCTGTGGCACCAGAGGTGCCAGCAGCCCCACAGGGGAAGTGTCCAGGTGGGCAGCCTGGGCAGTC
CircID chr14:22876002|22876196
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MLHQHRKSGSCSGQQAGSRLWHQRCQQPHRGSVQVGSLGS
Nucleotide Sequence CTGCTCCATCAGCACAGAAAGTCTGGTAGTTGCAGCGGTCAGCAGGCAGGTAGCAGGCTGTGGCACCAGAGGTGCCAGCAGCCCCACAGGGGAAGTGTCCAGGTGGGCAGCCTGGGCAGT
CircID chr14:22876002|22876196
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MPADRCNYQTFCADGADERRCRHCQPGNFRCRDEKCVYETW
Nucleotide Sequence CTGCCTGCTGACCGCTGCAACTACCAGACTTTCTGTGCTGATGGAGCAGATGAGAGACGCTGTCGGCATTGCCAGCCTGGCAATTTCCGATGCCGGGACGAGAAGTGCGTGTATGAGACGTGG
CircID chr14:22876002|22876196
ORF Type ORF4
Protein Length 58
Nucleotide Length 174
Protein Sequence MDTSPVGLLAPLVPQPATCLLTAATTRLSVLMEQMRDAVGIASLAISDAGTRSACMRR
Nucleotide Sequence CTGGACACTTCCCCTGTGGGGCTGCTGGCACCTCTGGTGCCACAGCCTGCTACCTGCCTGCTGACCGCTGCAACTACCAGACTTTCTGTGCTGATGGAGCAGATGAGAGACGCTGTCGGCATTGCCAGCCTGGCAATTTCCGATGCCGGGACGAGAAGTGCGTGTATGAGACGT
CircID chr14:22876002|22876196
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence LPRLPTWTLPLWGCWHLWCHSLLPAC
Nucleotide Sequence CTGCCCAGGCTGCCCACCTGGACACTTCCCCTGTGGGGCTGCTGGCACCTCTGGTGCCACAGCCTGCTACCTGCCTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab