CircRNA Information

General Information
circRNA Basic Information
CircID chr14:24141107|24141295
Strand -
CircType exon
Host Gene ENSG00000100908.12;
Algorism CIRI2;
Sequence CTGGTTGAGGGCGACCTCCAACATGACGGACAGGGCCAGGTGGCTGTGGAAGAGGGGCACACAGTCGGTGAGGCACAGGCATTCTCCAGACCGCGGCGCTGGCGCCAAAAACAGCCCGTTGACTGCGGCGTGTGGGTACCGGGCAGCATGCAGGCACATCTTCACGTAGGCCAGGGCCGAGATCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:24141107|24141295 hsa-miR-95-5p 0 0 1
chr14:24141107|24141295 hsa-miR-95-3p 0 0 1
chr14:24141107|24141295 hsa-miR-328-5p 0 0 1
chr14:24141107|24141295 hsa-miR-328-3p 0 0 1
chr14:24141107|24141295 hsa-miR-620 0 0 1
chr14:24141107|24141295 hsa-miR-892a 0 0 1
chr14:24141107|24141295 hsa-miR-1236-5p 0 0 1
chr14:24141107|24141295 hsa-miR-1236-3p 0 0 1
chr14:24141107|24141295 hsa-miR-1291 0 0 1
chr14:24141107|24141295 hsa-miR-1249-5p 0 0 1
chr14:24141107|24141295 hsa-miR-1249-3p 0 0 1
chr14:24141107|24141295 hsa-miR-1270 0 0 1
chr14:24141107|24141295 hsa-miR-1307-5p 0 0 1
chr14:24141107|24141295 hsa-miR-1307-3p 0 0 1
chr14:24141107|24141295 hsa-miR-146b-3p 0 0 1
chr14:24141107|24141295 hsa-miR-339-5p 0 0 1
chr14:24141107|24141295 hsa-miR-566 0 0 1
chr14:24141107|24141295 hsa-miR-576-3p 0 0 1
chr14:24141107|24141295 hsa-miR-455-5p 0 0 1
chr14:24141107|24141295 hsa-miR-550 0 0 1
chr14:24141107|24141295 hsa-miR-516b 0 0 1
chr14:24141107|24141295 hsa-miR-768-5p 0 0 1
chr14:24141107|24141295 hsa-miR-636 1 0 0
chr14:24141107|24141295 hsa-miR-661 1 0 0
chr14:24141107|24141295 hsa-miR-762 1 0 0
chr14:24141107|24141295 hsa-miR-1538 1 0 0
chr14:24141107|24141295 hsa-miR-4492 1 0 0
chr14:24141107|24141295 hsa-miR-4767 1 0 0
chr14:24141107|24141295 hsa-miR-7974 1 0 0
chr14:24141107|24141295 hsa-miR-9899 1 0 0
chr14:24141107|24141295 hsa-miR-214-5p 1 0 0
chr14:24141107|24141295 hsa-miR-1915-5p 1 0 0
chr14:24141107|24141295 hsa-miR-3663-5p 1 0 0
chr14:24141107|24141295 hsa-miR-6774-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6735-3p 1 0 0
chr14:24141107|24141295 hsa-miR-1909-5p 1 0 0
chr14:24141107|24141295 hsa-miR-6894-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6743-3p 1 0 0
chr14:24141107|24141295 hsa-miR-3120-5p 1 0 0
chr14:24141107|24141295 hsa-miR-6811-3p 1 0 0
chr14:24141107|24141295 hsa-miR-4758-3p 1 0 0
chr14:24141107|24141295 hsa-miR-1914-5p 1 0 0
chr14:24141107|24141295 hsa-miR-5088-3p 1 0 0
chr14:24141107|24141295 hsa-miR-1229-3p 1 0 0
chr14:24141107|24141295 hsa-miR-1271-3p 1 0 0
chr14:24141107|24141295 hsa-miR-324-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6792-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6862-3p 1 0 0
chr14:24141107|24141295 hsa-miR-10401-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6775-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6511b-3p 1 0 0
chr14:24141107|24141295 hsa-miR-6737-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:24141107|24141295
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence LVEGDLQHDGQGQVAVEEGHTVGEAQAFSRPRRWRQKQPVDCGVWVPGSMQAHLHVGQGRDLH
Nucleotide Sequence CTGGTTGAGGGCGACCTCCAACATGACGGACAGGGCCAGGTGGCTGTGGAAGAGGGGCACACAGTCGGTGAGGCACAGGCATTCTCCAGACCGCGGCGCTGGCGCCAAAAACAGCCCGTTGACTGCGGCGTGTGGGTACCGGGCAGCATGCAGGCACATCTTCACGTAGGCCAGGGCCGAGATCTCCAC
CircID chr14:24141107|24141295
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MRATSNMTDRARWLWKRGTQSVRHRHSPDRGAGAKNSPLTAACGYRAACRHIFT
Nucleotide Sequence TTGAGGGCGACCTCCAACATGACGGACAGGGCCAGGTGGCTGTGGAAGAGGGGCACACAGTCGGTGAGGCACAGGCATTCTCCAGACCGCGGCGCTGGCGCCAAAAACAGCCCGTTGACTGCGGCGTGTGGGTACCGGGCAGCATGCAGGCACATCTTCACGTAG
CircID chr14:24141107|24141295
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQ
Nucleotide Sequence CTGGCCTACGTGAAGATGTGCCTGCATGCTGCCCGGTACCCACACGCCGCAGTCAACGGGCTGTTTTTGGCGCCAGCGCCGCGGTCTGGAGAATGCCTGTGCCTCACCGACTGTGTGCCCCTCTTCCACAGCCACCTGGCCCTGTCCGTCATGTTGGAGGTCGCCCTCAACCAG
CircID chr14:24141107|24141295
ORF Type ORF4
Protein Length 49
Nucleotide Length 147
Protein Sequence MLPGTHTPQSTGCFWRQRRGLENACASPTVCPSSTATWPCPSCWRSPST
Nucleotide Sequence ATGCTGCCCGGTACCCACACGCCGCAGTCAACGGGCTGTTTTTGGCGCCAGCGCCGCGGTCTGGAGAATGCCTGTGCCTCACCGACTGTGTGCCCCTCTTCCACAGCCACCTGGCCCTGTCCGTCATGTTGGAGGTCGCCCTCAACC
CircID chr14:24141107|24141295
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MPVPHRLCAPLPQPPGPVRHVGGRPQP
Nucleotide Sequence ATGCCTGTGCCTCACCGACTGTGTGCCCCTCTTCCACAGCCACCTGGCCCTGTCCGTCATGTTGGAGGTCGCCCTCAACCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab