CircRNA Information

General Information
circRNA Basic Information
CircID chr14:24183474|24183802
Strand -
CircType exon
Host Gene ENSG00000196497.14;
Algorism CIRI2;
Sequence TTCTTCAAAGACACTTTCCATGTATGGAAGGAAGGCCACACTACAGAGAGAGACACAGCCGTGGGTAAGGGGCCCCCAGGCAGGGTTTTCAGTGCCAGGGAAGGGCGAATGCTCACCTGGTGTTCACAGAGATCTCCCCCACGGCAGCACAGGTGTCTTCCTTCTCATCGAAGAAGGCATTCTCCACGCTGTACCTAGAGTAAGAAGGGGAGGCAGTGGTGATCAGGCACCAAGAGGAGCAGATCCAGCACTAGGCCCTTGTCTAAAGCCAAAGTCTAGATTCCTGATCAGAAGAGCACCCCTCCGCACCCTGAGATCTCTGAGTCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:24183474|24183802 hsa-miR-197-5p 0 0 1
chr14:24183474|24183802 hsa-miR-197-3p 0 0 1
chr14:24183474|24183802 hsa-miR-383-5p 0 0 1
chr14:24183474|24183802 hsa-miR-383-3p 0 0 1
chr14:24183474|24183802 hsa-miR-511-5p 0 0 1
chr14:24183474|24183802 hsa-miR-511-3p 0 0 1
chr14:24183474|24183802 hsa-miR-520f-5p 0 0 1
chr14:24183474|24183802 hsa-miR-520f-3p 0 0 1
chr14:24183474|24183802 hsa-miR-570-5p 0 0 1
chr14:24183474|24183802 hsa-miR-570-3p 0 0 1
chr14:24183474|24183802 hsa-miR-587 0 1 1
chr14:24183474|24183802 hsa-miR-593-5p 0 0 1
chr14:24183474|24183802 hsa-miR-593-3p 0 0 1
chr14:24183474|24183802 hsa-miR-625-5p 0 0 1
chr14:24183474|24183802 hsa-miR-625-3p 0 0 1
chr14:24183474|24183802 hsa-miR-637 0 1 1
chr14:24183474|24183802 hsa-miR-648 0 0 1
chr14:24183474|24183802 hsa-miR-661 0 1 1
chr14:24183474|24183802 hsa-miR-658 1 1 1
chr14:24183474|24183802 hsa-miR-675-5p 0 0 1
chr14:24183474|24183802 hsa-miR-675-3p 0 0 1
chr14:24183474|24183802 hsa-miR-873-5p 0 0 1
chr14:24183474|24183802 hsa-miR-873-3p 0 0 1
chr14:24183474|24183802 hsa-miR-1179 0 1 1
chr14:24183474|24183802 hsa-miR-663b 0 0 1
chr14:24183474|24183802 hsa-miR-1287-5p 0 0 1
chr14:24183474|24183802 hsa-miR-1287-3p 0 0 1
chr14:24183474|24183802 hsa-miR-1248 0 0 1
chr14:24183474|24183802 hsa-miR-1249-5p 0 0 1
chr14:24183474|24183802 hsa-miR-1249-3p 0 0 1
chr14:24183474|24183802 hsa-miR-1253 0 0 1
chr14:24183474|24183802 hsa-miR-1266-5p 0 0 1
chr14:24183474|24183802 hsa-miR-1266-3p 0 0 1
chr14:24183474|24183802 hsa-miR-1275 0 1 1
chr14:24183474|24183802 hsa-miR-1252-5p 0 0 1
chr14:24183474|24183802 hsa-miR-1252-3p 0 0 1
chr14:24183474|24183802 hsa-miR-125a-3p 0 1 1
chr14:24183474|24183802 hsa-miR-296-5p 0 0 1
chr14:24183474|24183802 hsa-miR-512-3p 0 0 1
chr14:24183474|24183802 hsa-miR-532-5p 0 0 1
chr14:24183474|24183802 hsa-miR-767-3p 0 0 1
chr14:24183474|24183802 hsa-miR-342-5p 0 1 1
chr14:24183474|24183802 hsa-miR-142-3p 0 1 1
chr14:24183474|24183802 hsa-miR-220b 0 0 1
chr14:24183474|24183802 hsa-miR-1274a 0 0 1
chr14:24183474|24183802 hsa-miR-550 0 0 1
chr14:24183474|24183802 hsa-miR-7 0 0 1
chr14:24183474|24183802 hsa-miR-644 0 0 1
chr14:24183474|24183802 hsa-miR-1300 0 0 1
chr14:24183474|24183802 hsa-miR-1254 0 0 1
chr14:24183474|24183802 hsa-miR-1201 0 0 1
chr14:24183474|24183802 hsa-miR-638 1 0 0
chr14:24183474|24183802 hsa-miR-644a 0 1 0
chr14:24183474|24183802 hsa-miR-1268b 1 0 0
chr14:24183474|24183802 hsa-miR-4518 1 1 0
chr14:24183474|24183802 hsa-miR-4531 0 1 0
chr14:24183474|24183802 hsa-miR-4683 0 1 0
chr14:24183474|24183802 hsa-miR-4686 0 1 0
chr14:24183474|24183802 hsa-miR-4721 1 0 0
chr14:24183474|24183802 hsa-miR-6080 0 1 0
chr14:24183474|24183802 hsa-miR-7974 1 1 0
chr14:24183474|24183802 hsa-miR-8073 0 1 0
chr14:24183474|24183802 hsa-miR-11400 1 1 0
chr14:24183474|24183802 hsa-miR-12119 1 0 0
chr14:24183474|24183802 hsa-miR-7-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6836-3p 0 1 0
chr14:24183474|24183802 hsa-miR-3692-5p 1 0 0
chr14:24183474|24183802 hsa-miR-7114-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6776-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6873-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6726-3p 0 1 0
chr14:24183474|24183802 hsa-miR-491-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6772-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6770-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6782-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6882-3p 1 1 0
chr14:24183474|24183802 hsa-miR-6788-3p 0 1 0
chr14:24183474|24183802 hsa-miR-5088-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6772-3p 0 1 0
chr14:24183474|24183802 hsa-miR-3127-5p 1 0 0
chr14:24183474|24183802 hsa-miR-3667-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6823-5p 1 0 0
chr14:24183474|24183802 hsa-miR-4733-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6828-3p 0 1 0
chr14:24183474|24183802 hsa-miR-4762-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6895-3p 1 1 0
chr14:24183474|24183802 hsa-miR-6886-3p 0 1 0
chr14:24183474|24183802 hsa-miR-5088-3p 0 1 0
chr14:24183474|24183802 hsa-miR-20b-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6734-3p 0 1 0
chr14:24183474|24183802 hsa-miR-3688-3p 0 1 0
chr14:24183474|24183802 hsa-miR-4763-3p 0 1 0
chr14:24183474|24183802 hsa-miR-6870-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6752-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6756-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6803-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6751-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6780a-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6797-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6858-5p 1 0 0
chr14:24183474|24183802 hsa-miR-6799-3p 0 1 0
chr14:24183474|24183802 hsa-miR-5008-3p 0 1 0
chr14:24183474|24183802 hsa-miR-4665-5p 0 1 0
chr14:24183474|24183802 hsa-miR-324-3p 1 1 0
chr14:24183474|24183802 hsa-miR-6529-5p 0 1 0
chr14:24183474|24183802 hsa-miR-5581-5p 0 1 0
chr14:24183474|24183802 hsa-miR-6781-3p 0 1 0
chr14:24183474|24183802 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:24183474|24183802
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MLTWCSQRSPPRQHRCLPSHRRRHSPRCT
Nucleotide Sequence ATGCTCACCTGGTGTTCACAGAGATCTCCCCCACGGCAGCACAGGTGTCTTCCTTCTCATCGAAGAAGGCATTCTCCACGCTGTACCTAG
CircID chr14:24183474|24183802
ORF Type ORF2
Protein Length 103
Nucleotide Length 309
Protein Sequence MYGRKATLQRETQPWVRGPQAGFSVPGKGECSPGVHRDLPHGSTGVFLLIEEGILHAVPRVRRGGSGDQAPRGADPALGPCLKPKSRFLIRRAPLRTLRSLSH
Nucleotide Sequence ATGTATGGAAGGAAGGCCACACTACAGAGAGAGACACAGCCGTGGGTAAGGGGCCCCCAGGCAGGGTTTTCAGTGCCAGGGAAGGGCGAATGCTCACCTGGTGTTCACAGAGATCTCCCCCACGGCAGCACAGGTGTCTTCCTTCTCATCGAAGAAGGCATTCTCCACGCTGTACCTAGAGTAAGAAGGGGAGGCAGTGGTGATCAGGCACCAAGAGGAGCAGATCCAGCACTAGGCCCTTGTCTAAAGCCAAAGTCTAGATTCCTGATCAGAAGAGCACCCCTCCGCACCCTGAGATCTCTGAGTCAT
CircID chr14:24183474|24183802
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MVFTEISPTAAQVSSFSSKKAFSTLYLE
Nucleotide Sequence CTGGTGTTCACAGAGATCTCCCCCACGGCAGCACAGGTGTCTTCCTTCTCATCGAAGAAGGCATTCTCCACGCTGTACCTAGAGTAA
CircID chr14:24183474|24183802
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MALDKGLVLDLLLLVPDHHCLPFLL
Nucleotide Sequence TTGGCTTTAGACAAGGGCCTAGTGCTGGATCTGCTCCTCTTGGTGCCTGATCACCACTGCCTCCCCTTCTTACTCTAG
CircID chr14:24183474|24183802
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MCCRGGDLCEHQVSIRPSLALKTLPGGPLPTAVSLSVVWPSFHTWKVSLK
Nucleotide Sequence CTGTGCTGCCGTGGGGGAGATCTCTGTGAACACCAGGTGAGCATTCGCCCTTCCCTGGCACTGAAAACCCTGCCTGGGGGCCCCTTACCCACGGCTGTGTCTCTCTCTGTAGTGTGGCCTTCCTTCCATACATGGAAAGTGTCTTTGAAG
CircID chr14:24183474|24183802
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence MITTASPSYSRYSVENAFFDEKEDTCAAVGEISVNTR
Nucleotide Sequence CTGATCACCACTGCCTCCCCTTCTTACTCTAGGTACAGCGTGGAGAATGCCTTCTTCGATGAGAAGGAAGACACCTGTGCTGCCGTGGGGGAGATCTCTGTGAACACCAGGTGA
CircID chr14:24183474|24183802
ORF Type ORF7
Protein Length 30
Nucleotide Length 93
Protein Sequence MPPLLTLGTAWRMPSSMRRKTPVLPWGRSL
Nucleotide Sequence CTGCCTCCCCTTCTTACTCTAGGTACAGCGTGGAGAATGCCTTCTTCGATGAGAAGGAAGACACCTGTGCTGCCGTGGGGGAGATCTCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab