CircRNA Information

General Information
circRNA Basic Information
CircID chr14:24186708|24186955
Strand -
CircType exon
Host Gene ENSG00000196497.14;
Algorism CIRI2;
Sequence CTTGCTCTTGACTTTGACCAAGAAAGTGAGGCAGCAGAGAATACGTATGCGTATCGCATTGCCCAGGGCCACATTTCTAGCTACCTGTCCACAGAATAATAAAAATCAGCGACAGGGAAGGAGAGTCCCAGCAGAGCATGTAGCAGGGGCCATGTCCACTCCAGGCTCACCTCCAGGCAGAATGTGAGGACTTCAGAGAGGTAGGGGGTGATGACCGGCACCTCTGACTCCAACAGTTCATCCAAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:24186708|24186955 hsa-miR-23a-5p 0 0 1
chr14:24186708|24186955 hsa-miR-23a-3p 0 0 1
chr14:24186708|24186955 hsa-miR-221-5p 0 0 1
chr14:24186708|24186955 hsa-miR-221-3p 0 0 1
chr14:24186708|24186955 hsa-miR-222-5p 0 0 1
chr14:24186708|24186955 hsa-miR-222-3p 0 0 1
chr14:24186708|24186955 hsa-miR-23b-5p 0 0 1
chr14:24186708|24186955 hsa-miR-23b-3p 0 0 1
chr14:24186708|24186955 hsa-miR-122-5p 0 0 1
chr14:24186708|24186955 hsa-miR-122-3p 0 0 1
chr14:24186708|24186955 hsa-miR-328-5p 0 0 1
chr14:24186708|24186955 hsa-miR-328-3p 0 0 1
chr14:24186708|24186955 hsa-miR-335-5p 0 0 1
chr14:24186708|24186955 hsa-miR-335-3p 0 0 1
chr14:24186708|24186955 hsa-miR-520g-5p 0 0 1
chr14:24186708|24186955 hsa-miR-520g-3p 0 0 1
chr14:24186708|24186955 hsa-miR-520h 0 0 1
chr14:24186708|24186955 hsa-miR-578 0 0 1
chr14:24186708|24186955 hsa-miR-612 0 0 1
chr14:24186708|24186955 hsa-miR-630 0 0 1
chr14:24186708|24186955 hsa-miR-661 1 0 1
chr14:24186708|24186955 hsa-miR-663b 1 1 1
chr14:24186708|24186955 hsa-miR-1291 0 0 1
chr14:24186708|24186955 hsa-miR-1255a 0 0 1
chr14:24186708|24186955 hsa-miR-339-5p 0 0 1
chr14:24186708|24186955 hsa-miR-1289 0 0 1
chr14:24186708|24186955 hsa-miR-1274a 0 0 1
chr14:24186708|24186955 hsa-miR-1274b 0 0 1
chr14:24186708|24186955 hsa-miR-1255b 0 0 1
chr14:24186708|24186955 hsa-miR-1285 0 0 1
chr14:24186708|24186955 hsa-miR-1254 0 0 1
chr14:24186708|24186955 hsa-miR-608 1 0 0
chr14:24186708|24186955 hsa-miR-637 1 0 0
chr14:24186708|24186955 hsa-miR-665 1 0 0
chr14:24186708|24186955 hsa-miR-2861 1 0 0
chr14:24186708|24186955 hsa-miR-3138 0 1 0
chr14:24186708|24186955 hsa-miR-3183 1 1 0
chr14:24186708|24186955 hsa-miR-4254 0 1 0
chr14:24186708|24186955 hsa-miR-4421 1 0 0
chr14:24186708|24186955 hsa-miR-4430 1 0 0
chr14:24186708|24186955 hsa-miR-4682 1 0 0
chr14:24186708|24186955 hsa-miR-4686 0 1 0
chr14:24186708|24186955 hsa-miR-6071 0 1 0
chr14:24186708|24186955 hsa-miR-6860 0 1 0
chr14:24186708|24186955 hsa-miR-146a-3p 0 1 0
chr14:24186708|24186955 hsa-miR-4433b-3p 1 0 0
chr14:24186708|24186955 hsa-miR-3194-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6873-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6845-3p 0 1 0
chr14:24186708|24186955 hsa-miR-7108-5p 0 1 0
chr14:24186708|24186955 hsa-miR-6732-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6728-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6882-3p 0 1 0
chr14:24186708|24186955 hsa-miR-939-3p 1 0 0
chr14:24186708|24186955 hsa-miR-7854-3p 0 1 0
chr14:24186708|24186955 hsa-miR-4640-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6801-5p 0 1 0
chr14:24186708|24186955 hsa-miR-6802-3p 0 1 0
chr14:24186708|24186955 hsa-miR-130b-5p 1 1 0
chr14:24186708|24186955 hsa-miR-181c-5p 1 0 0
chr14:24186708|24186955 hsa-miR-3162-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6812-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6737-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6752-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6803-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6819-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6851-5p 1 1 0
chr14:24186708|24186955 hsa-miR-6751-5p 1 1 0
chr14:24186708|24186955 hsa-miR-3127-3p 1 0 0
chr14:24186708|24186955 hsa-miR-3620-5p 1 0 0
chr14:24186708|24186955 hsa-miR-5189-5p 0 1 0
chr14:24186708|24186955 hsa-miR-4745-5p 1 0 0
chr14:24186708|24186955 hsa-miR-1271-3p 1 0 0
chr14:24186708|24186955 hsa-miR-6791-5p 1 0 0
chr14:24186708|24186955 hsa-miR-6893-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6801-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6805-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6810-3p 0 1 0
chr14:24186708|24186955 hsa-miR-4723-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6769b-3p 0 1 0
chr14:24186708|24186955 hsa-miR-6508-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr14:24186708|24186955
ORF Type ORF1
Protein Length 61
Nucleotide Length 186
Protein Sequence LLLTLTKKVRQQRIRMRIALPRATFLATCPQNNKNQRQGRRVPAEHVAGAMSTPGSPPGRM
Nucleotide Sequence TTGCTCTTGACTTTGACCAAGAAAGTGAGGCAGCAGAGAATACGTATGCGTATCGCATTGCCCAGGGCCACATTTCTAGCTACCTGTCCACAGAATAATAAAAATCAGCGACAGGGAAGGAGAGTCCCAGCAGAGCATGTAGCAGGGGCCATGTCCACTCCAGGCTCACCTCCAGGCAGAATGTGA
CircID chr14:24186708|24186955
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MDELLESEVPVITPYLSEVLTFCLEVSLEWTWPLLHALLGLSFPVADFYYSVDR
Nucleotide Sequence TTGGATGAACTGTTGGAGTCAGAGGTGCCGGTCATCACCCCCTACCTCTCTGAAGTCCTCACATTCTGCCTGGAGGTGAGCCTGGAGTGGACATGGCCCCTGCTACATGCTCTGCTGGGACTCTCCTTCCCTGTCGCTGATTTTTATTATTCTGTGGACAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab