CircRNA Information

General Information
circRNA Basic Information
CircID chr14:24211485|24211711
Strand +
CircType exon
Host Gene ENSG00000254692.1;
Algorism CIRI2;
Sequence AGCCAAGAAGTATGGGACCAAGAATAAGAGAGGTAATGAGGGAAACAAGCCTATGGGGAGGGCCCAGATGGGAAGCAGGTGCTTCTGACTCTTGATGTTCAGGGTATGGGCTGGGTCAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr14:24211485|24211711 hsa-miR-10a-5p 0 0 1
chr14:24211485|24211711 hsa-miR-10a-3p 0 0 1
chr14:24211485|24211711 hsa-miR-10b-5p 0 0 1
chr14:24211485|24211711 hsa-miR-10b-3p 0 0 1
chr14:24211485|24211711 hsa-miR-223-5p 0 0 1
chr14:24211485|24211711 hsa-miR-223-3p 0 0 1
chr14:24211485|24211711 hsa-miR-335-5p 0 0 1
chr14:24211485|24211711 hsa-miR-335-3p 0 0 1
chr14:24211485|24211711 hsa-miR-133b 0 0 1
chr14:24211485|24211711 hsa-miR-612 0 0 1
chr14:24211485|24211711 hsa-miR-1227-5p 0 0 1
chr14:24211485|24211711 hsa-miR-1227-3p 0 0 1
chr14:24211485|24211711 hsa-miR-1202 0 1 1
chr14:24211485|24211711 hsa-miR-1247-5p 0 0 1
chr14:24211485|24211711 hsa-miR-1247-3p 0 0 1
chr14:24211485|24211711 hsa-miR-1256 0 0 1
chr14:24211485|24211711 hsa-miR-1261 0 0 1
chr14:24211485|24211711 hsa-miR-513c-5p 0 0 1
chr14:24211485|24211711 hsa-miR-513c-3p 0 0 1
chr14:24211485|24211711 hsa-miR-296-5p 0 0 1
chr14:24211485|24211711 hsa-miR-508-5p 0 0 1
chr14:24211485|24211711 hsa-miR-516a-3p 0 0 1
chr14:24211485|24211711 hsa-miR-642 0 0 1
chr14:24211485|24211711 hsa-miR-1285 0 0 1
chr14:24211485|24211711 hsa-miR-133a 0 0 1
chr14:24211485|24211711 hsa-miR-326 1 1 0
chr14:24211485|24211711 hsa-miR-3165 0 1 0
chr14:24211485|24211711 hsa-miR-4651 1 0 0
chr14:24211485|24211711 hsa-miR-6745 0 1 0
chr14:24211485|24211711 hsa-miR-7706 1 0 0
chr14:24211485|24211711 hsa-miR-12116 0 1 0
chr14:24211485|24211711 hsa-miR-6749-3p 1 0 0
chr14:24211485|24211711 hsa-miR-874-5p 1 0 0
chr14:24211485|24211711 hsa-miR-6875-3p 1 1 0
chr14:24211485|24211711 hsa-miR-345-3p 0 1 0
chr14:24211485|24211711 hsa-miR-939-3p 1 0 0
chr14:24211485|24211711 hsa-miR-7161-3p 1 0 0
chr14:24211485|24211711 hsa-miR-6804-3p 0 1 0
chr14:24211485|24211711 hsa-miR-4778-3p 1 1 0
chr14:24211485|24211711 hsa-miR-4750-3p 0 1 0
chr14:24211485|24211711 hsa-miR-5585-5p 0 1 0
chr14:24211485|24211711 hsa-miR-26a-1-3p 0 1 0
chr14:24211485|24211711 hsa-miR-3913-3p 0 1 0
chr14:24211485|24211711 hsa-miR-6735-5p 0 1 0
chr14:24211485|24211711 hsa-miR-7843-5p 0 1 0
chr14:24211485|24211711 hsa-miR-6724-5p 0 1 0
chr14:24211485|24211711 hsa-miR-4723-3p 1 1 0
chr14:24211485|24211711 hsa-miR-7161-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr14:24211485|24211711
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MTLDVQGMGWVSCPTGFAEEEKIRTAAGTN
Nucleotide Sequence CTGACTCTTGATGTTCAGGGTATGGGCTGGGTCAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGA
CircID chr14:24211485|24211711
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MMFRVWAGSAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENA
Nucleotide Sequence TTGATGTTCAGGGTATGGGCTGGGTCAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCC
CircID chr14:24211485|24211711
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGPRIREVMRETSLWGGPRWEAGASDS
Nucleotide Sequence ATGGGACCAAGAATAAGAGAGGTAATGAGGGAAACAAGCCTATGGGGAGGGCCCAGATGGGAAGCAGGTGCTTCTGACTCTTGA
CircID chr14:24211485|24211711
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MGQLPYRLCGGRKDSNSSWHKLTGHYPPWSFSVRPLRMP
Nucleotide Sequence CTGGGTCAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCA
CircID chr14:24211485|24211711
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MSRQFVPAAVRIFSSSAKPVGQLTQPIP
Nucleotide Sequence ATGTCCCGTCAGTTTGTGCCAGCTGCTGTTCGAATCTTTTCTTCCTCCGCAAAGCCTGTAGGGCAGCTGACCCAGCCCATACCCTGA
CircID chr14:24211485|24211711
ORF Type ORF6
Protein Length 34
Nucleotide Length 102
Protein Sequence MNIKSQKHLLPIWALPIGLFPSLPLLFLVPYFLA
Nucleotide Sequence CTGAACATCAAGAGTCAGAAGCACCTGCTTCCCATCTGGGCCCTCCCCATAGGCTTGTTTCCCTCATTACCTCTCTTATTCTTGGTCCCATACTTCTTGGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab